Identifying Interacting Genetic Variations by Fish-Swarm Logic Regression

Table 1

Accuracy for different numbers of causal SNPs. The column “Causal” shows the number of casual sites. The type I error rate is the percentage of missed causal sites divided by the number of selected SNPs. The type II error rate is the percentage of wrong selections of noncausal SNPs among all of the SNPs involved in a regression model. For each simulation configuration, the number is computed based on 100 repeats.

Causal	FSLR		MCLR		FBLR		LogicFS
	Type I	Type II	Type I	Type II	Type I	Type II	Type I	Type II
10	0.65%	65.00%	1.38%	88.30%	0.52%	52.00%	0.63%	63.00%
20	1.38%	69.00%	1.21%	94.75%	1.34%	67.00%	1.47%	73.50%
30	1.75%	58.33%	1.20%	96.13%	2.15%	71.67%	2.21%	73.67%
40	2.53%	63.25%	1.18%	97.30%	3.02%	75.50%	3.22%	80.50%
50	3.72%	69.40%	1.14%	97.64%	4.05%	81.00%	3.98%	79.60%
60	3.80%	63.33%	1.10%	97.90%	4.73%	78.83%	4.90%	81.67%
70	4.62%	66.00%	1.08%	98.17%	5.78%	82.57%	5.82%	83.14%
80	5.40%	67.50%	1.09%	98.48%	6.24%	78.00%	6.58%	82.25%
90	5.38%	59.79%	1.10%	98.91%	7.24%	80.44%	7.67%	85.22%
100	6.44%	64.40%	1.05%	98.40%	7.76%	77.60%	8.47%	84.70%