An Alternative Approach to Protein Folding

Table 3

RMSD result for tertiary structures.

Proteins	No. RES	Score for 2D	RMSD of 3D
2MHU	30	73.3	3
1VII	35	72.2	4.8
1CBH	36	75.3	4.3
3RNT	54	61.65	4.1
1DUR	55	74.45	3.7
1OVO	56	53.9	5.8
1BW6	56	70	6.1
2NMQ	57	64.18	5.8
2UTG	70	62.85	3.8
1UBQ	76	76.32	5.4
2PCY	99	61.1	4
5CYT	103	68.94	4.7
7RSA	124	73.7	5.1
1PAB	127	74.04	4.2
2CCY	128	81.56	6.3
2SNS	149	54.02	6.7
1AAQ	157	73	6.2
AVG	83.06	69.94	4.94

A tertiary structure prediction result based on the kinetic model. RMSD values are based on each backbone atom position comparison for tertiary structure prediction. Also a score of 2D means the matching percentage for the secondary structure determination.