Research Article

Exploring the Cooccurrence Patterns of Multiple Sets of Genomic Intervals

Table 1

The estimated model parameters from mouse ES data with 8 clusters. The row shows the estimated cluster sizes. The rest of the table shows , the probability of occurrence of protein binding in different clusters.

Cluster 1 2 3 4 5 6 7 8

0.23 0.23 0.18 0.12 0.08 0.07 0.07 0.03

Nanog 0.00 0.00 0.00 0.00 0.03 1.00 0.13 0.85
Oct4 0.00 0.01 0.01 0.07 0.02 0.08 0.20 0.53
Sox2 0.00 0.01 0.01 0.07 0.02 0.17 0.07 0.69
Smad1 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.25
Stat3 0.00 0.01 0.01 0.12 0.02 0.02 0.10 0.31
Cmyc 0.00 0.00 0.00 0.05 0.01 0.00 0.43 0.06
Nmyc 0.01 0.01 0.01 0.08 0.05 0.00 0.71 0.16
Klf4 0.01 0.04 0.05 0.20 0.11 0.06 0.60 0.53
Esrrb 0.00 1.00 0.19 0.01 0.21 0.20 0.71 0.78
Tcfcp2I1 0.00 0.00 1.00 0.00 0.19 0.16 0.60 0.73
Zfx 0.01 0.04 0.04 0.34 0.21 0.03 0.73 0.31
E2f1 0.00 0.00 0.00 0.00 1.00 0.02 0.86 0.56
Suz12 0.00 0.03 0.03 0.12 0.01 0.01 0.06 0.02
Ctcf 1.00 0.06 0.08 0.02 0.10 0.03 0.25 0.11
p300 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.06