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BioMed Research International
Volume 2013 (2013), Article ID 658270, 12 pages
“Zebrafishing” for Novel Genes Relevant to the Glomerular Filtration Barrier
1Division of Nephrology, Hannover Medical School, Carl-Neuberg-Strße 1, 30625 Hannover, Germany
2Mount Desert Island Biological Laboratory, P.O. Box 35, Old Bar Harbor Road, Salisbury Cove, ME 04672, USA
Received 2 April 2013; Accepted 15 July 2013
Academic Editor: Richard Tucker
Copyright © 2013 Nils Hanke et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
- J. Summerton and D. Weller, “Morpholino antisense oligomers: design, preparation, and properties,” Antisense and Nucleic Acid Drug Development, vol. 7, no. 3, pp. 187–195, 1997.
- R. M. Hudziak, E. Barofsky, D. F. Barofsky, D. L. Weller, S.-B. Huang, and D. D. Weller, “Resistance of morpholino phosphorodiamidate oligomers to enzymatic degradation,” Antisense and Nucleic Acid Drug Development, vol. 6, no. 4, pp. 267–272, 1996.
- Y. L. Yan, C. T. Miller, R. M. Nissen et al., “A zebrafish sox9 gene required for cartilage morphogenesis,” Development, vol. 129, no. 21, pp. 5065–5079, 2002.
- O. Buchardt, M. Egholm, R. H. Berg, and P. E. Nielsen, “Peptide nucleic acids and their potential applications in biotechnology,” Trends in Biotechnology, vol. 11, no. 9, pp. 384–386, 1993.
- N. T. de Costa and J. M. Heemstra, “Evaluating the effect of ionic strength on duplex stability for PNA having negatively or positively charged side chains,” PLoS One, vol. 8, no. 3, Article ID e58670, 2013.
- V. A. Efimov, O. G. Chakhmakhcheva, and E. Wickstrom, “Synthesis and application of negatively charged PNA analogues,” Nucleosides, Nucleotides and Nucleic Acids, vol. 24, no. 10–12, pp. 1853–1874, 2005.
- J. C. Hanvey, N. J. Peffer, J. E. Bisi et al., “Antisense and antigene properties of peptide nucleic acids,” Science, vol. 258, no. 5087, pp. 1481–1485, 1992.
- E. Wickstrom, M. Choob, K. A. Urtishak et al., “Sequence specificity of alternating hydroyprolyl/phosphono peptide nucleic acids against zebrafish embryo mRNAs,” Journal of Drug Targeting, vol. 12, no. 6, pp. 363–372, 2004.
- J. Summerton, “Morpholino antisense oligomers: the case for an RNase H-independent structural type,” Biochimica et Biophysica Acta, vol. 1489, no. 1, pp. 141–158, 1999.
- B. W. Draper, P. A. Morcos, and C. B. Kimmel, “Inhibition of zebrafish fgf8 pre-mRNA splicing with morpholino oligos: a quantifiable method for gene knockdown,” Genesis, vol. 30, no. 3, pp. 154–156, 2001.
- P. A. Morcos, “Achieving targeted and quantifiable alteration of mRNA splicing with Morpholino oligos,” Biochemical and Biophysical Research Communications, vol. 358, no. 2, pp. 521–527, 2007.
- A. Nasevicius and S. C. Ekker, “Effective targeted gene ‘knockdown’ in zebrafish,” Nature Genetics, vol. 26, no. 2, pp. 216–220, 2000.
- A. Nasevicius, J. Larson, and S. G. Ekker, “Distinct requirements for zebrafish angiogenesis revealed by a VEGF-A morphant,” Yeast, vol. 17, no. 4, pp. 294–301, 2000.
- N. Holder and Q. Xu, “Microinjection of DNA, RNA, and protein into the fertilized zebrafish egg for analysis of gene function,” Methods in Molecular Biology, vol. 97, pp. 487–490, 1999.
- G. W. Stuart, J. V. McMurray, and M. Westerfield, “Replication, integration and stable germ-line transmission of foreign sequences injected into early zebrafish embryos,” Development, vol. 103, no. 2, pp. 403–412, 1988.
- T. Muramatsu, Y. Mizutani, Y. Ohmori, and J.-I. Okumura, “Comparison of three nonviral transfection methods for foreign gene expression in early chicken embryos in ovo,” Biochemical and Biophysical Research Communications, vol. 230, no. 2, pp. 376–380, 1997.
- H. Ogino and K. Yasuda, “Induction of lens differentiation by activation of a bZIP transcription factor, L-Maf,” Science, vol. 280, no. 5360, pp. 115–118, 1998.
- K. Sakamoto, H. Nakamura, M. Takagi, S. Takeda, and K.-I. Katsube, “Ectopic expression of lunatic Fringe leads to downregulation of Serrate- 1 in the developing chick neural tube; analysis using in ovo electroporation transfection technique,” FEBS Letters, vol. 426, no. 3, pp. 337–341, 1998.
- K. Yasuda, T. Momose, and Y. Takahashi, “Applications of microelectroporation for studies of chick embryogenesis,” Development Growth and Differentiation, vol. 42, no. 3, pp. 203–206, 2000.
- S. Yasugi and H. Nakamura, “Gene transfer into chicken embryos as an effective system of analysis in developmental biology,” Development Growth and Differentiation, vol. 42, no. 3, pp. 195–197, 2000.
- R. Kos, M. V. Reedy, R. L. Johnson, and C. A. Erickson, “The winged-helix transcription factor FoxD3 is important for establishing the neural crest lineage and repressing melanogenesis in avian embryos,” Development, vol. 128, no. 8, pp. 1467–1479, 2001.
- R. Kos, R. P. Tucker, R. Hall, T. D. Duong, and C. A. Erickson, “Methods for introducing morpholinos into the chicken embryo,” Developmental Dynamics, vol. 226, no. 3, pp. 470–477, 2003.
- M. Swartz, J. Eberhart, G. S. Mastick, and C. E. Krull, “Sparking new frontiers: using in vivo electroporation for genetic manipulations,” Developmental Biology, vol. 233, no. 1, pp. 13–21, 2001.
- E. Schnapp and E. M. Tamaka, “Quantitative evaluation of morpholino-mediated protein knockdown of GFP, MSX1, and PAX7 during tail regeneration in Ambystoma mexicanum,” Developmental Dynamics, vol. 232, no. 1, pp. 162–170, 2005.
- D. R. Hyde, A. R. Godwin, and R. Thummel, “In vivo electroporation of morpholinos into the regenerating adult zebrafish tail fin,” Journal of Visualized Experiments, no. 61, article 3632, 2012.
- R. Thummel, S. Bai, M. P. Sarras Jr. et al., “Inhibition of zebrafish fin regeneration using in vivo electroporation of morpholinos against fgfr1 and msxb,” Developmental Dynamics, vol. 235, no. 2, pp. 336–346, 2006.
- P. A. Morcos, Y. Li, and S. Jiang, “Vivo-morpholinos: a non-peptide transporter delivers Morpholinos into a wide array of mouse tissues,” BioTechniques, vol. 45, no. 6, pp. 613–623, 2008.
- Y.-F. Li and P. A. Morcos, “Design and synthesis of dendritic molecular transporter that achieves efficient in vivo delivery of morpholino antisense oligo,” Bioconjugate Chemistry, vol. 19, no. 7, pp. 1464–1470, 2008.
- M. Carrillo, S. Kim, S. K. Rajpurohit, V. Kulkarni, and P. Jagadeeswaran, “Zebrafish von Willebrand factor,” Blood Cells, Molecules, and Diseases, vol. 45, no. 4, pp. 326–333, 2010.
- Y. Guo, L. Ma, M. Cristofanilli, R. P. Hart, A. Hao, and M. Schachner, “Transcription factor Sox11b is involved in spinal cord regeneration in adult zebrafish,” Neuroscience, vol. 172, pp. 329–341, 2011.
- O. A. Elsalini, J. von Gartzen, M. Cramer, and K. B. Rohr, “Zebrafish hhex, nk2.1a, and pax2.1 regulate thyroid growth and differentiation downstream of Nodal-dependent transcription factors,” Developmental Biology, vol. 263, no. 1, pp. 67–80, 2003.
- K. N. Wallace, S. Yusuff, J. M. Sonntag, A. J. Chin, and M. Pack, “Zebrafish hhex regulates liver development and digestive organ chirality,” Genesis, vol. 30, no. 3, pp. 141–143, 2001.
- G. Weidinger, J. Stebler, K. Slanchev et al., “Dead end, a novel vertebrate germ plasm component, is required for zebrafish primordial germ cell migration and survival,” Current Biology, vol. 13, no. 16, pp. 1429–1434, 2003.
- G. Hauptmann and T. Gerster, “Complex expression of the zp-50 pou gene in the embryonic zebrafish brain is altered by overexpression of sonic hedgehog,” Development, vol. 122, no. 6, pp. 1769–1780, 1996.
- S. Krauss, J.-P. Concordet, and P. W. Ingham, “A functionally conserved homolog of the Drosophila segment polarity gene hh is expressed in tissues with polarizing activity in zebrafish embryos,” Cell, vol. 75, no. 7, pp. 1431–1444, 1993.
- A. Ucar, S. K. Gupta, J. Fiedler et al., “The miRNA-212/132 family regulates both cardiac hypertrophy and cardiomyocyte autophagy,” Nature Communications, vol. 3, article 1078, 2012.
- A. J. Giraldez, R. M. Cinalli, M. E. Glasner et al., “MicroRNAs regulate brain morphogenesis in zebrafish,” Science, vol. 308, no. 5723, pp. 833–838, 2005.
- A. Kelly and A. F. Hurlstone, “The use of RNAi technologies for gene knockdown in zebrafish,” Briefings in Functional Genomics, vol. 10, no. 4, pp. 189–196, 2011.
- K. M. Jaffe, S. Y. Thiberge, M. E. Bisher, and R. D. Burdine, “Imaging cilia in zebrafish,” Methods in Cell Biology, vol. 97, pp. 415–435, 2010.
- B. Verstraeten, E. Sanders, and A. Huysseune, “Whole mount immunohistochemistry and in situ hybridization of larval and adult zebrafish dental tissues,” Methods in Molecular Biology, vol. 887, pp. 179–191, 2012.
- C. D. Kemp and J. V. Conte, “The pathophysiology of heart failure,” Cardiovascular Pathology, vol. 21, no. 5, pp. 365–371, 2012.
- E. C. Siddall and J. Radhakrishnan, “The pathophysiology of edema formation in the nephrotic syndrome,” Kidney International, vol. 82, no. 6, pp. 635–642, 2012.
- I. A. Drummond, A. Majumdar, H. Hentschel et al., “Early development of the zebrafish pronephros and analysis of mutations affecting pronephric function,” Development, vol. 125, no. 23, pp. 4655–4667, 1998.
- F. Bollig, R. Mehringer, B. Perner et al., “Identification and comparative expression analysis of a second wt1 gene in zebrafish,” Developmental Dynamics, vol. 235, no. 2, pp. 554–561, 2006.
- B. Perner, C. Englert, and F. Bollig, “The Wilms tumor genes wt1a and wt1b control different steps during formation of the zebrafish pronephros,” Developmental Biology, vol. 309, no. 1, pp. 87–96, 2007.
- D. M. Hentschel, M. Mengel, L. Boehme et al., “Rapid screening of glomerular slit diaphragm integrity in larval zebrafish,” American Journal of Physiology—Renal Physiology, vol. 293, no. 5, pp. F1746–F1750, 2007.
- J. Xie, E. Farage, M. Sugimoto, and B. Anand-Apte, “A novel transgenic zebrafish model for blood-brain and blood-retinal barrier development,” BMC Developmental Biology, vol. 10, article 76, 2010.
- S. Ashworth, B. Teng, J. Kaufeld et al., “Cofilin-1 inactivation leads to proteinuria—studies in zebrafish, mice and humans,” PloS one, vol. 5, no. 9, Article ID e12626, 2010.
- F. C. Serluca, I. A. Drummond, and M. C. Fishman, “Endothelial signaling in kidney morphogenesis: a role for hemodynamic forces,” Current Biology, vol. 12, no. 6, pp. 492–497, 2002.
- I. A. Drummond and A. J. Davidson, “Zebrafish kidney development,” Methods in Cell Biology, vol. 100, pp. 233–260, 2010.
- B. C. Das, K. McCartin, T.-C. Liu, R. T. Peterson, and T. Evans, “A forward chemical screen in zebrafish identifies a retinoic acid derivative with receptor specificity,” PLoS One, vol. 5, no. 4, Article ID e10004, 2010.
- J. Hyvärinen, M. Parikka, R. Sormunen et al., “Deficiency of a transmembrane prolyl 4-hydroxylase in the zebrafish leads to basement membrane defects and compromised kidney function,” Journal of Biological Chemistry, vol. 285, no. 53, pp. 42023–42032, 2010.
- Y. Nishibori, K. Katayama, M. Parikka et al., “Glcci1 deficiency leads to proteinuria,” Journal of the American Society of Nephrology, vol. 22, no. 11, pp. 2037–2046, 2011.
- W. Zhou and F. Hildebrandt, “Inducible podocyte injury and proteinuria in transgenic zebrafish,” Journal of the American Society of Nephrology, vol. 23, no. 6, pp. 1039–1047, 2012.