Simpute: An Efficient Solution for Dense Genotypic Data

Figure 1

Imputation accuracy compared across BEAGLE, IMPUTE, BIMBAM, SNPMStat, MACH, and plink using the complete set. The curve with IMPUTE-call_thresh-0 stands for the best setting (call thresh = 0) we found for Impute rather than the default setting. Accuracy = number of correctly imputed entries/number of missing entries *100%.