Simpute: An Efficient Solution for Dense Genotypic Data

Table 6

The error rates* for random missing SNPs of short input at 𝑟²≥0.9 from the HapMap phase III on chromosome 21 of short input for the CEU.

Method/missing rate	Simpute	BEAGLE
0.1%	37.136/483 (7.69%)	38.09/483 (7.89%)
0.5%	188/2412 (7.79%)	183.6364/2412 (7.61%)
1%	378.333/4823 (7.84%)	376.762/4823 (7.81%)
5%	1913.632/24111 (7.94%)	1892.053/24111 (7.84%)

^∗Error rates = number of error imputed entries/number of missing entries *100%.