Research Article
Simpute: An Efficient Solution for Dense Genotypic Data
Table 7
Error rates* and computation time for random missing SNPs of high LD for the CEU samples.
| | Method/missing rate |
Simpute | BEAGLE | | Error rate | Running time (sec) | Error rate | Running time (sec) |
| | 0.1% | 5.52/483 (1.14%) | 12.88 | 4.49/483 (0.93%) | 164.17 | | 0.5% | 27.94/2412 (1.16%) | 13.09 | 21.01/2412 (0.87%) | 164.82 | | 1% | 57.22/4823 (1.19%) | 14.07 | 44.07/4823 (0.91%) | 168.47 | | 5% | 321.9/24111 (1.33%) | 18.24 | 224.65/24111 (0.974%) | 168.69 |
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rates = number of error imputed entries/number of missing entries *100%.
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