Research Article
Simpute: An Efficient Solution for Dense Genotypic Data
Table 8
Error rates* and computation time for random missing SNPs of high LD for the CHB + JPT samples.
| | Method/missing rate |
Simpute | BEAGLE | | Error rate | Running time (sec) | Error rate | Running time (sec) |
| | 0.1% | 5.15/493 (1.04%) | 10.90 | 4.64/493 (0.94%) | 138.40 | | 0.5% | 27.29/2463 (1.10%) | 11.08 | 24/2463 (0.97%) | 139.79 | | 1% | 55.07/4925 (1.11%) | 11.77 | 47.69/4925 (0.97%) | 138.96 | | 5% | 322.38/24622 (1.31%) | 16.113 | 242.26/24622 (0.98%) | 140.96 |
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rates = number of error imputed entries/number of missing entries *100%.
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