Differentially Methylated Loci Distinguish Ovarian Carcinoma Histological Types: Evaluation of a DNA Methylation Assay in FFPE Tissue

Table 1

Average β-values for CEPH control replicates at 6 housekeeping X-chromosome genes.

Target CpG (Gene_Probe)^a	CpG locus ID	NA10851 replicate 1	NA10851 replicate 2	NA10859 replicate 1	NA10859 replicate 2
		Male	Male	Female	Female
EFNB1_E69_F	cg09459058	0.0126	0.2023	0.7337	0.6362
EFNB1_P136_R	cg14717445	0	0.0464	0.7696	0.7287
EFNB1_P17_F	cg22151131	0.0347	0.4068	0.9331	0.9314
ELK1_E156_F	cg00983071	0	0.3000	0.6910	0.6078
ELK1_E53_F	cg12482901	0	0.2093	0.8778	0.8242
ELK1_P195_R	cg13072663	0.0609	0.1694	0.8192	0.7816
ELK1_P569_R	cg11111083	0.0635	0.2362	0.8847	0.8524
FMR1_P62_R	cg26857803	0	0	0.8810	0.8428
G6PD_E190_F	cg10661350	0	0.0003	0.6423	0.6107
G6PD_P1065_R	cg26368202	0	0	0.9371	0.9436
G6PD_P196_F	cg27592930	0.0674	0.1537	0.6010	0.6159
G6PD_P597_F	cg26178557	0	0.7808	0.9157	0.9148
GLA_E98_R	cg15481221	0.0667	0.0802	0.7609	0.6608
GLA_P112_F	cg20747453	0	0	0.9764	0.9668
GLA_P343_R	cg24484149	0	0.0134	0.3123	0.2510
GPC3_E72_F	cg27496708	0	0	0.6807	0.7110
GPC3_P235_R	cg07504028	0.0240	0.0475	0.8579	0.8565

aProbe annotation according to the Illumina GoldenGate Cancer Panel I methylation assay; all loci are located within CpG islands.