865181.fig.001a
(a) Run92Trim empirical versus reported Phred score
865181.fig.001b
(b) Run92Trim empirical Phred score by cycle
865181.fig.001c
(c) Run92Trim mean depth versus GC
865181.fig.001d
(d) Run92Trim insert size distribution
Figure 1: A subset of figures generated by QPLOT on an Illumina run. (a) Empirical base quality scores versus the scores stored in the BAM files. (b) Empirical base quality scores by cycles. (c) Bias of depth by GC content. (d) Insert size distribution.