Comparative Study of Exome Copy Number Variation Estimation Tools Using Array Comparative Genomic Hybridization as Control

Table 1

Kullback-Leibler test on similarity with array CGH.

	aCGH	cn.MOPS	exomeCopy	ExomeDepth	CoNIFER
Deletion CNVs proportion similarity
aCGH	0	0.14	0.16	0.17	2.24
cn.MOPS	0.15	0	0.22	0.24	1.84
exomeCopy	0.16	0.23	0	0.2	1.88
ExomeDepth	0.22	0.27	0.23	0	2.56
CoNIFER	0.8	0.97	0.87	0.72	0
Duplication CNVs proportion similarity
aCGH	0	0.4	0.4	0.47	0.66
cn.MOPS	0.36	0	0.42	0.66	0.61
exomeCopy	0.42	0.59	0	0.18	0.26
ExomeDepth	0.55	1.06	0.25	0	0.55
CoNIFER	0.77	0.58	0.26	0.42	0