Identification of Key Genes in the Response to Salmonella enterica Enteritidis, Salmonella enterica Pullorum, and Poly(I:C) in Chicken Spleen and Caecum

Table 4

(a) Upregulation of differentially expressed genes in the caecum in group SP with FC ≥ 2 and signal density of raw data ≥ 100. (b) Downregulation of differentially expressed genes in the caecum in group SP with FC ≥ 2 and signal density of raw data ≥ 100.

(a)

Probe name	𝑃 value	|FC|	Group SP (raw_data)	Control (raw_data)	Gene symbol
A_87_P017067	0.014833	2.241353	27158.97	10506.86	CLEC3B
A_87_P055986	0.026444	2.048135	9172.174	3898.472	PDLIM3
A_87_P110393	0.044918	2.134904	8211.222	3363.067	FHL2
A_87_P193418	0.046498	2.219647	7528.244	2944.842	FHL2
A_87_P213848	0.026094	2.937232	6073.972	1757.178	LOC423423
A_87_P265788	0.047425	2.028906	5994.927	2552.497	BAG2
A_87_P055721	0.004181	2.57088	5538.785	1861.226	HOXD11
A_87_P009294	0.004336	2.365375	3699.251	1356.083	HOXD11
A_87_P080001	0.006183	2.206574	2488.212	976.5921	CISD1
A_87_P245708	0.033453	2.915283	2122.973	633.1538	ANLN
A_87_P034042	0.040937	4.771468	2106.639	398.8331	ACTC1
A_87_P051766	0.046243	2.132916	1784.825	733.5394	LOC418424
A_87_P151068	0.008562	2.248188	1701.529	656.2959	MAMDC2
A_87_P037492	0.021	2.189082	1638.75	647.6197	PDLIM3
A_87_P009048	0.026677	2.046262	1590.921	674.5408	CENPF
A_87_P085056	0.046133	2.137321	1406.97	564.0237	SCG5
A_87_P092561	0.009984	2.567488	1324.834	446.0624	MAMDC2
A_87_P152008	0.004968	2.519559	775.9677	266.9718	KLHDC8A
A_87_P027905	0.019624	2.050455	704.9199	299.1262	COMP
A_87_P054746	0.021351	2.122426	545.0016	223.2091	CENPF
A_87_P102401	0.003087	2.933887	352.884	104.1954	ANLN
A_87_P236533	0.046516	7.077659	318.3763	37.00138	C20H20orf85
A_87_P104513	0.002662	3.046689	315.2515	89.91791	MYBL1
A_87_P179618	0.018637	3.150793	305.2546	84.68122	LOC768920
A_87_P319922	0.024433	3.271542	299.3379	78.5472	LOC768920
A_87_P022300	0.046964	2.042768	291.6057	122.5599	RIC3
A_87_P145383	0.039066	2.329995	282.5269	105.3242	SLIT1
A_87_P104908	0.009377	2.041087	208.8738	88.86916	OSR2
A_87_P021436	0.04428	2.539008	183.9284	63.00039	TUB
A_87_P037697	0.043356	3.221175	163.8235	45.27623	COL20A1
A_87_P296773	0.039883	2.340923	156.9485	58.23907	ALDH1L2
A_87_P037881	0.00596	3.139463	155.8588	43.17721	SOUL
A_87_P053201	0.026585	2.044309	141.0832	59.69648	SYNPR
A_87_P037934	0.034472	8.460807	139.0743	15.11028	GDF5
A_87_P056771	0.021345	2.403871	131.1553	47.09236	GLP1R
A_87_P106548	0.033798	2.003954	122.4247	53.13174	TRHDE
A_87_P101681	0.006572	2.674664	117.2865	37.99509	DGKB
A_87_P054406	0.029114	2.063656	110.2237	46.68424	OXTR

(b)

Probe name	𝑃 value	|FC|	Group SP (raw_data)	Control (raw_data)	Gene symbol
A_87_P081341	0.008753	2.100018	5147.149	9383.597	LOC423942
A_87_P124573	0.018046	2.063123	4147.323	7464.053	MOV10
A_87_P034814	0.007111	2.76483	2803.302	6681.683	IFIT5
A_87_P081336	0.008268	2.142918	2141.293	3960.148	LOC423942
A_87_P275528	0.028744	2.018683	1590.584	2771.403	PSAP
A_87_P094106	0.046616	2.009193	998.6245	1720.768	GPR112
A_87_P315787	0.01107	2.017383	404.4446	704.7305	PARP14
A_87_P129690	0.012764	2.245596	218.1902	424.9018	CATHL3
A_87_P263168	0.027271	2.157093	171.706	317.8527	PLBD1
A_87_P018024	0.028947	12.86841	147.5546	1823.653	CD72
A_87_P022808	0.042314	2.469146	122.4936	258.4686	MOG
A_87_P016668	0.039132	2.424182	118.4504	252.0765	CILP