A Novel Isolate with Deletion in GP3 Gene of Porcine Reproductive and Respiratory Syndrome Virus from Mid-Eastern China

Table 3

Nucleotide and deduced amino acid identities of SH1211 compared with those of WUH4, QYYZ, HB-1(sh)/2002, JXA1, SY0608, MN184C, VR-2332, CH-1a, and LV (%).

SH1211%	Identity to SH1211
	WUH4	QYYZ	HB-1(sh)/2002	JXA1	SY0608	MN184C	VR-2332	CH-1a	LV
Nucleotides (length)
5′UTR (188)	96.8	92.6	93.6	96.8	96.3	88.9	91.0	94.2	53.3
ORF1a (7422)	96.1	82.0	93.0	96.0	96.1	76.5	84.7	90.8	53.2
ORF1b (4383)	94.8	89.0	93.9	94.9	94.9	86.4	89.9	92.8	63.0
ORF2 (771)	91.3	92.9	92.2	91.3	91.4	87.1	91.1	92.7	63.8
ORF3 (759)	94.9	88.7	92.9	95.2	95.6	84.7	87.3	92.9	61.5
ORF4 (537)	96.0	93.8	94.4	95.3	96.8	86.2	89.1	94.4	64.3
ORF5 (603)	83.9	92.8	84.4	84.4	84.4	85.0	84.5	85.5	59.0
ORF6 (525)	97.5	90.0	97.1	97.5	97.5	90.6	94.6	95.2	68.5
ORF7 (372)	96.7	87.9	96.2	97.0	96.7	90.0	92.2	94.8	61.5
3′UTR (150)	98.0	84.9	94.7	98.0	97.3	90.7	54.9	94.7	55.9
Complete (15,313)	95.0	86.0	92.9	94.9	95.1	81.8	87.4	91.7	58.0
Amino acid (length)
nsp1a (180)	94.4	96.1	97.7	99.4	99.4	94.4	95.0	96.6	65.0
nsp1b (203)	92.6	81.2	90.6	92.6	91.6	75.8	80.2	84.2	39.7
nsp2 (950)	94.1	74.6	89.2	94.2	94.1	62.3	76.7	84.8	33.8
nsp3 (446)	97.6	90.0	96.9	98.0	98.0	93.0	95.3	98.0	56.1
nsp4 (204)	98.0	91.1	97.5	98.0	98.0	93.1	94.1	95.5	62.7
nsp5 (170)	98.2	84.9	98.2	98.2	97.6	85.8	92.3	94.7	71.1
nsp6 (16)	100	100	100	100	100	93.7	93.7	100	75.0
nsp7 (259)	98.0	94.5	95.7	98.4	98.4	84.9	88.4	95.3	43.7
nsp8 (45)	97.7	97.7	95.5	97.7	97.7	95.5	97.7	97.7	66.6
nsp9 (643)	98.3	98.3	96.7	97.3	97.7	96.0	97.8	98.1	75.9
nsp10 (441)	97.2	96.3	97.1	97.2	97.1	93.9	94.8	96.8	65.0
nsp11 (223)	98.6	95.5	96.8	98.2	98.2	94.6	96.4	97.7	76.3
nsp12 (153)	93.4	92.1	93.4	93.4	94.3	94.7	91.5	93.4	39.2
GP2 (257)	91.0	93.3	90.6	91.0	91.0	84.3	88.6	91.7	60.1
E (74)	90.5	95.9	90.5	90.5	90.5	93.2	93.2	90.5	70.2
GP3 (253)	92.5	85.4	89.3	93.3	94.0	85.0	85.8	89.3	53.0
GP4 (179)	95.5	94.3	97.1	94.3	97.7	89.3	89.3	97.1	69.3
GP5 (201)	84.5	94.0	84.5	85.0	84.5	85.0	82.5	85.5	52.6
M (175)	98.8	96.5	98.8	98.8	98.8	96.5	97.7	97.1	79.3
N (124)	97.5	91.0	95.9	97.5	96.7	91.0	93.4	94.3	58.0