Differential Gene Expression in High- and Low-Active Inbred Mice
Table 1
SNP variation between high- and low-active mice.
Gene
Sequence accession no.
Chromosome no.
SNP position
Nucleotide change
Region
On chromosome
In gene
C3H/HeJ
C57L/J
Actn2
NC_000079
1
12269977
551
T
C
intron 1
12277437
8011
G
A
intron 1
12282994
13568
C
T
intron 1
12290237
20811
G
A
intron 1
12299638
30212
A
T
intron 2
12300030
30604
A
C
intron 2
12301365
31939
G
A
intron 4
12336213
66787
C
T
intron 18
12336314
66888
G
A
intron 18
Casq1
NC_000067
1
172213506
3612
T
G
intron 3
172213681
3787
A
G
intron 3
Drd2
NC_000075
9
49344757
4095
G
A
5′ UTR
49353453
12791
A
G
5′ UTR
49367545
26883
T
C
5′ UTR
49372928
32266
G
A
5′ UTR
49372964
32302
C
T
5′ UTR
49373405
32743
A
T
5′ UTR
49376079
35417
A
G
5′ UTR
49376164
35502
T
C
5′ UTR
49396183
55521
G
A
intron 1
Lepr
NC_000070
4
101802391
84984
C
T
intron 17
101802709
85302
T
G
intron 17
Papss2
NC_000085
19
32607198
11483
T
C
intron 1
32607669
11954
G
A
intron 1
32613744
18029
C
T
intron 1
32626984
31269
C
T
intron 1
32633562
37847
T
C
intron 1
32649103
53388
A
C
intron 7
32653353
57638
G
A
intron 8
32665695
69980
C
A
3′ UTR
Haplotype and SNP data were obtained from the Mouse Phylogeny Viewer (http://msub.csbio.unc.edu/). C57L/J are high-active mice and C3H/HeJ are low-active mice.