Research Article
An Improved Distance Matrix Computation Algorithm for Multicore Clusters
Table 6
DistVect1 comparison against other programs.
| Software | Platform | Maximum sequence length | Highest GCUPS | Highest speedup |
| CUDASW++ 2 | Dual-GPU GeForce GTX 295 | 59 k | 28 (144–5478) | 1.78 with (CUDASW++ 1.0) | CUDASW++ 3 | Dual-GPU GeForce GTX 690 | 59 k | 185.60 (144–5478) | 3.2 with (CUDASW++ 2.0) | MC64-ClustalWP2 | Intel Xeon Quad Core | 300 k | 0.92 | 7.76 with (ClustalW-MPI) | SSE2 | Cell/BE | 0.858 k | 0.0058 | 76.20 with ClustalW sequential | ClustalW-MPI | PC cluster | 1100 | 0.07 | 14.5 with ClustalW sequential | DistVect1 | Cluster of multicores | 163 k | 11.69 | 9.2 with (ClustalW-MPI) |
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