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BioMed Research International
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2014
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Article
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Tab 1
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Research Article
Bioinformatic Prediction of WSSV-Host Protein-Protein Interaction
Table 1
The downloaded information used for database construction in the present study.
Database
Download address
Definition
Data type
Name used in the present study
Reactome
http://www.uniprot.org/downloads
UniProtKB/TrEMBL
Reference sequence (Fasta)
Reactome gene database
http://www.reactome.org/download/all_interactions.html
Drosophila melanogaster protein-protein interaction pairs
Interaction relation table
Reactome interaction relation table
DIP
http://dip.doe-mbi.ucla.edu/dip/Download.cgi?SM=4
fasta20120218.seq
Reference sequence (Fasta)
DIP gene database
http://dip.doe-mbi.ucla.edu/dip/Download.cgi?SM=3
dip20120818.txt
Interaction relation table
DIP interaction relation table
STRING9.0
http://string-db.org/newstring_cgi/show_download_
ā
page.pl?UserId=DNt0ic8Ndem8&sessionId=heGmVXVt8w_a
protein.sequences.v9.0.fa.gz
Reference sequence (Fasta)
STRING gene database
protein.actions.v9.0.txt.gz
Interaction relation table
STRING interaction relation table