Review Article
Applied Graph-Mining Algorithms to Study Biomolecular Interaction Networks
Table 2
A summary of module detection methods by the strategy employed.
| Methods | Module detection strategy | Specification | References | Topological | Both |
| MCODE | Seed-and-extend | x | | [6] | SPICi | Seed-and-extend | x | | [46] | Kernel set | Seed-and-extend | | x | [47] | PRODISTIN | Hierarchical clustering | | x | [49] | ADJW and Hall | Hierarchical clustering | x | | [52] | Divisive | Hierarchical clustering | x | | [53] | Edge clustering | Hierarchical clustering | x | | [54, 55] | RNSC | Optimization | x | | [56] | jActiveModules | Optimization | | x | [59] | Modularity density | Optimization | x | | [60] | HOTNET | Optimization | | x | [61] | Semi-supervised | Probabilistic | | x | [62] | Bayesian network | Probabilistic | | x | [63] | MCL | Probabilistic | x | | [64] | Frequent subgraph | Frequency-based method | x | | [3, 67, 68] |
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