BioMed Research International / 2014 / Article / Tab 1 / Research Article
Molecular Epidemiology of Genogroup II Noroviruses Infection in Outpatients with Acute Gastroenteritis in Nanjing, China (2010–2013) Table 1 Primer and probe oligonucleotides used for real-time quantitative RT-PCR for NoV GI and GII, sapovirus, rotavirus, human astrovirus, and enteric adenovirus.
Primer or probe Sequence
References Cog 1F (GI) cgY tgg atg cgl ttY cat ga Cog 1R (GI) ctt aga cgc cat cat cat tYa c Ring 1A (GI) FAMb -aga tYg cga tcY cct gtc ca-BHQc Ring 1B (GI) FAM-aga tcg cgg tct cct gtc ca-BHQ Trujillo et al. [12 ] Cog 2F (GII) caR gaR BcN atg tty agR tgg atg ag Cog 2R (GII) tcg acg cca tct tca ttc aca Ring 2 (GII) FAM-tgg gag ggc gat cgc aat ct-BHQ SapoF gct gtt scy act ggt gca SapoP FAM-cca atc saa tgt ccc tga ggc aat acg saa-BHQ Gunson et al. [13 ] SapoR ggc atc ctg tcr ttc caa gca NVP3-FDeg acc atc twc acr tra ccc tc
Freeman et al. [14 ] NVP3-R ggt cac ata acg ccc c NVP3-R1 ggt cac ata acg ccc cta ta NVP3-Probe FAM-atg agc aca ata gtt aaa agc taa cac tgt caa-BHQ AV1 ccg agt agg atc gag ggt AV2 gct tct gat taa atc aat ttt aa Le Cann et al. [15 ] AVs FAM-ctt ttc tgt ctc tgt tta gat tat ttt aat cac c-TAMRAd Adeno.fwd ttc cag cat aat aac tcw ggc ttt g
Logan et al. [16 ] Adeno.rev aat ttt ttc tgw gtc agg ctt gg Adeno.probe1 FAM-cca tac ccc ctt att gg-TAMRA Adeno.probe2 FAM-cct tac ccc ctt att gg-TAMRA
R = A or G, Y = C or T, N = any, W = T, U or A.
b FAM, 6-carboxyfluorescein reporter dye.
c BHQ, black hole quencher dye.
d TAMRA, quencher dye.