Table 1: Putative transcription factors regulating miR-122 gene. The bold items indicate the experimental-supported TFs. PCC represents the Pearson’s correlation coefficient between each TF-encoded gene and miR-122.

Matrix_IDTranscription factorGenePCCOccurrence

V$ELF1_Q6Elf-1ELF10.192827242
V$MAFB_01MAFBMAFB0.383476239
V$TBX5_02TBX5TBX50.132419227
V$NR1B2_Q6NR1B2RARB0.117271226
V$CDX2_Q5_02CDX-2CDX20.105817215
V$GATA1_01GATA-1GATA10.0128229215
V$SMAD3_Q6_01Smad3SMAD30.0915205203
V$HNF4A_Q6_01HNF-4alphaHNF4A0.316168191
V$SOX5_01SOX5SOX50.149287185
V$SPI1_03SPI1SPI10.268782178
V$ERBETA_Q5ER-betaESR20.303769176
V$GATA1_02GATA-1GATA10.0128229173
V$GATA1_05GATA-1GATA10.0128229168
V$GATA1_06GATA-1GATA10.0128229168
V$CDX2_Q5_01Cdx-2CDX20.105817167
V$MAZ_Q6MAZMAZ0.414832166
V$MYOD_Q6_01MyoDMYOD10.306424164
V$PITX3_Q2PITX3PITX30.127413160
V$ING4_01ING4ING40.234372158
V$HNF3B_Q6HNF-3betaFOXA20.44036154
V$CDX2_01Cdx-2CDX20.105817152
V$CRX_Q4CrxCRX0.243011149
V$HNF3A_01HNF3AFOXA10.140429148
V$GATA1_04GATA-1GATA10.0128229139
V$ERR1_Q3ERR1ESRRA0.18197135
V$CEBPE_Q6CEBPECEBPE0.0949125133
V$HNF1_02HNF-1alphaHNF1A0.363153122
V$CRX_02CrxCRX0.243011119
V$NEUROD_02NeuroDNEUROD10.0402891114
V$MAZ_Q6_01MAZMAZ0.414832110
V$OC2_Q3OC-2ONECUT20.124899102
V$IRF7_Q3IRF-7IRF70.13082100
V$PIT1_Q6Pit-1POU1F10.31988699
V$DBP_Q6_01DBPDBP0.04300176
V$CEBPG_Q6_01C/EBPgammaCEBPG0.02711773
V$MYOD_01MyoDMYOD10.30642472
V$CREL_01c-RelREL0.2944444
V$CEBPG_Q6C/EBPgammaCEBPG0.02711743
V$ATF4_Q6ATF-4ATF40.025123740
V$HOXA7_01HOXA7HOXA70.39745331
V$E2F1_Q4E2F-1E2F10.11061429
V$ATF5_01ATF5ATF50.91278226