Research Article

Inference of SNP-Gene Regulatory Networks by Integrating Gene Expressions and Genetic Perturbations

Table 1

TPR and FDR of SML, IAL1, and IAL2.

TPR FDR
SML IAL1 IAL2 SML IAL1 IAL2

100 10 0.9888 1.0000 0.9742 0.0860 0 0.0104
20 0.9980 1.0000 0.9448 0.0503 0 0.0292
30 0.9951 1.0000 0.8936 0.0364 0 0.0754

500 10 0.9967 1.0000 1.0000 0.0704 0 0
20 0.9850 1.0000 0.9436 0.0400 0 0.0369
30 1.0000 1.0000 0.9128 0.0016 0 0.0562

Expected number of edges per node is and 10 replicates of random network are used. N and M indicate the number of samples and genes, respectively.