Metabolic Modeling of Common Escherichia coli Strains in Human Gut Microbiome

Table 2

Different metabolites in E. coli strains.

Metabolites	Descriptions	Formulas	Charges
4h2opntn	4-Hydroxy-2-oxopentanoate	C5H7O4	−1
acglc-D	6-Acetyl-D-glucose	C8H14O7	0
acmalt	Acetyl-maltose	C14H24O12	0
alatrna	L-Alanyl-tRNA(Ala)	C3H6NOR	1
all6p	D-Allose 6-phosphate	C6H11O9P	−2
alltt	Allantoate	C4H7N4O4	−1
allul6p	Allulose 6-phosphate	C6H11O9P	−2
cechddd	cis-3-(3-Carboxyethyl)-3,5-cyclohexadiene-1,2-diol	C9H11O4	−1
cenchddd	cis-3-(3-Carboxyethenyl)-3,5-cyclohexadiene-1,2-diol	C9H9O4	−1
cinnm	trans-Cinnamate	C9H7O2	−1
dhcinnm	2,3-Dihydroxicinnamic acid	C9H7O4	−1
dhpppn	3-(2,3-Dihydroxyphenyl)propanoate	C9H9O4	−1
dtdp4d6dm	dTDP-4-dehydro-6-deoxy-L-mannose	C16H22N2O15P2	−2
dtdprmn	dTDP-L-Rhamnose	C16H24N2O15P2	−2
frulysp	Fructoselysine phosphate	C12H24N2O10P	−1
gdpddman	GDP-4-Dehydro-6-deoxy-D-mannose	C16H21N5O15P2	−2
gdpfuc	GDP-L-Fucose	C16H23N5O15P2	−2
gdpofuc	GDP-4-oxo-L-Fucose	C16H21N5O15P2	−2
gg4abut	Gamma-glutamyl-gamma aminobutyric acid	C9H15O5N2	−1
ggbutal	Gamma-glutamyl-gamma-butyraldehyde	C9H16O4N2	0
ggptrc	Gamma-glutamyl-putrescine	C9H20O3N3	1
hkndd	2-Hydroxy-6-oxonona-2,4-diene-1,9-dioate	C9H8O6	−2
hkntd	2-Hydroxy-6-ketononatrienedioate	C9H6O6	−2
malt6p	Maltose 6′-phosphate	C12H21O14P	−2
man6pglyc	2(alpha-D-Mannosyl-6-phosphate)-D-glycerate	C9H14O12P	−3
op4en	2-Oxopent-4-enoate	C5H5O3	−1
pac	Phenylacetic acid	C8H7O2	−1
phaccoa	Phenylacetyl-CoA	C29H38N7O17P3S	−4
phetrna	L-Phenylalanyl-tRNA(Phe)	C9H10NOR	1
trnaala	tRNA(Ala)	R	0
trnaphe	tRNA(Phe)	R	0
urdglyc	(-)-Ureidoglycolate	C3H5N2O4	−1