BLAT-Based Comparative Analysis for Transposable Elements: BLATCAT

Table 5

The result of Censor within BLATCAT.

Name	From	To	Name	From	To	Class	Dir	Sim	Pos/Mm : Ts	Score
Human (SVG plot; alignments; masked)
Human	10	368	HAL1B	610	973	NonLTR/L1	c	0.7003	2.0667	774
Chimpanzee (SVG plot; alignments; masked)
Chimpanzee	10	368	HAL1B	610	974	NonLTR/L1	c	0.6955	2.0652	745
Chimpanzee	386	434	Gypsy-2_HMM-I	5194	5247	LTR/Gypsy	c	0.8039	1.6	209
Gorilla (SVG plot; alignments; masked)
Gorilla	1	151	L1MC1	923	1075	NonLTR/L1	d	0.7843	1.3478	757
Gorilla	154	489	HAL1B	610	953	NonLTR/L1	c	0.6907	1.8936	674
Orangutan (SVG plot; alignments; masked)
Orangutan	10	361	HAL1B	617	973	NonLTR/L1	c	0.7064	1.8298	761
Orangutan	386	434	Gypsy-2_HMM-I	5194	5247	LTR/Gypsy	c	0.8039	1.6	209
Gibbon (SVG plot; alignments; masked)
Gibbon	11	367	HAL1B	610	973	NonLTR/L1	c	0.6966	1.9375	765
Gibbon	385	433	Gypsy-2_HMM-I	5194	5247	LTR/Gypsy	c	0.8039	1.6	209
Rhesus (SVG plot; alignments; masked)
Rhesus	24	355	HAL1B	610	954	NonLTR/L1	c	0.6677	1.9231	606

The Censor output is shown. Each table shows the result of each species obtained from the Censor analysis.