Research Article
A De Novo Genome Assembly Algorithm for Repeats and Nonrepeats
Table 2
The effect of depth to SWA.
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Sequence length kb containing five types of repeats. Sequencing depths are changing from 6 to 0.2. Contigs of repeat and nonrepeat are generated in an independent ways by SWA at different depths with basic parameters: read length , filtered times = 1, sliding window size , and . Contigs smaller than 200 are removed. |