Research Article
Computational Evidence of NAGNAG Alternative Splicing in Human Large Intergenic Noncoding RNA
Table 1
NAGNAG acceptors in lincRNA confirmed by RNA-seq.
| | Transcript ID | linc name | chr | Site 1 | Site 1 existence | Site 2 | Site 2 existence | Strand | Neighbouring gene |
| | TCONS_00000929 | linc-CMPK1-3 | chr1 | 47645537 | Data 1, 2 | 47645540 | Data 1, 2 | + | CMPK1 | | TCONS_00001552 | linc-CTBS-1 | chr1 | 85084564 | Data 1 | 85084567 | Data 1 | − | CTBS | | TCONS_00002502 | linc-CRP-1 | chr1 | 159746542 | Data 1 | 159746545 | Data 1 | − | CRP | | TCONS_00002232 | linc-IARS2-3 | chr1 | 219414541 | Data 1, 2 | 219414544 | Data 1 | + | IARS2 | | TCONS_00018502 | linc-GDF10-1 | chr10 | 48515547 | Data 1 | 48515550 | Data 1 | − | GDF10 | | TCONS_00021357 | linc-BEST3-1 | chr12 | 70124473 | Data 1 | 70124476 | Data 2 | − | BEST3 | | TCONS_00020623 | linc-TMEM132C-14 | chr12 | 126580786 | Data 1, 2 | 126580789 | Data 1 | + | TMEM132C | | TCONS_00023051 | linc-DIO3-8 | chr14 | 101363930 | Data 2 | 101363933 | Data 2 | + | DIO3 | | TCONS_00023721 | linc-ANP32A-1 | chr15 | 69753046 | Data 2 | 69753049 | Data 1, 2 | − | ANP32A | | TCONS_00023791 | linc-FAM174B-1 | chr15 | 93325371 | Data 1, 2 | 93325374 | Data 1 | − | FAM174B | | TCONS_00023799 | linc-RGMA-7 | chr15 | 95753867 | Data 1 | 95753870 | Data 1 | − | RGMA | | TCONS_00024399 | linc-CHD9-6 | chr16 | 51806287 | Data 1 | 51806290 | Data 1 | + | CHD9 | | TCONS_00025631 | linc-NR1D1-1 | chr17 | 38277663 | Data 1 | 38277666 | Data 1, 2 | − | NR1D1 | | TCONS_00025146 | linc-VEZF1-1 | chr17 | 56066627 | Data 1, 2 | 56066630 | Data 1, 2 | − | VEZF1 | | TCONS_00026560 | linc-NETO1-1 | chr18 | 71351479 | Data 1, 2 | 71351482 | Data 1, 2 | − | NETO1 | | TCONS_00027051 | linc-ZNF227-1 | chr19 | 44700207 | Data 1 | 44700210 | Data 1 | + | ZNF227 | | TCONS_00004960 | linc-ITGA4-2 | chr2 | 181940923 | Data 1 | 181940926 | Data 1 | + | ITGA4 | | TCONS_00003507 | linc-GPR55-1 | chr2 | 231856751 | Data 1, 2 | 231856754 | Data 2 | − | GPR55 | | TCONS_00029585 | linc-RASD2-1 | chr22 | 35850418 | Data 1 | 35850421 | Data 1 | + | RASD2 | | TCONS_00005471 | linc-TMEM14E-2 | chr3 | 153103176 | Data 1 | 153103179 | Data 1 | − | TMEM14E | | TCONS_00007527 | linc-SPATA18-1 | chr4 | 52912845 | Data 1, 2 | 52912848 | Data 1, 2 | + | SPATA18 | | TCONS_00009387 | linc-OSMR-1 | chr5 | 38792356 | Data 1 | 38792359 | Data 1 | + | OSMR | | TCONS_00010010 | linc-POLR3G-10 | chr5 | 87581558 | Data 1, 2 | 87581561 | Data 1, 2 | + | POLR3G | | TCONS_00010012 | linc-POLR3G-10 | chr5 | 87583253 | Data 1, 2 | 87583256 | Data 1 | + | POLR3G | | TCONS_00009724 | linc-LYSMD3-2 | chr5 | 90610061 | Data 1, 2 | 90610064 | Data 1, 2 | − | LYSMD3 | | TCONS_00010581 | linc-MGAT1-2 | chr5 | 180257403 | Data 1 | 180257406 | Data 1 | − | MGAT1 | | TCONS_00012396 | linc-PSMG4-1 | chr6 | 3257557 | Data 1 | 3257560 | Data 1 | + | PSMG4 | | TCONS_00011322 | linc-FAM135A-1 | chr6 | 71104930 | Data 1 | 71104933 | Data 1 | + | FAM135A | | TCONS_00012862 | linc-FAM20C-2 | chr7 | 153409 | Data 1 | 153412 | Data 1 | + | FAM20C | | TCONS_00014103 | linc-SEPT7-1 | chr7 | 35756638 | Data 1 | 35756641 | Data 1, 2 | + | SEPT7 | | TCONS_00014833 | linc-UTP23-3 | chr8 | 112757671 | Data 1, 2 | 112757674 | Data 2 | + | UTP23 |
|
|
