Identification and Characterization of the Grape WRKY Family

Table 1

Members of the grape WRKY superfamily of transcription factors.

Name	Protein^a	Chr	Deduced polypeptide			Organism	Group	Domain
			Length (aa)	PI	MW (kDa)			Family name	Pattern
VvWRKY 1-1	GI:50953501	*	151	9.61	17.7	Vitis vinifera	IIc	1-1	C-X4-C-X23-HXH
VvWRKY 1-2	GI:50953502	*	297	9.67	17.7	Vitis vinifera	IIc	1-2	C-X4-C-X23-HXH
VvWRKY 2-1	GI:359476618	4	700	6.52	75.9	Vitis vinifera	I-NTWD	2-1N	C-X4-C-X22-HXH
							I-CTWD	2-1C	C-X4-C-X23-HXH
VvWRKY 2-2	GI:225463536	19	734	5.7	80.3	Vitis vinifera	I-NTWD	2-1N	C-X4-C-X22-HXH
							I-CTWD	2-2C	C-X4-C-X23-HXH
VvWRKY 2-3	GI:225469228	*	536	7.21	58.44	Vitis vinifera	I-NTWD	2-3N	C-X4-C-X22-HXH
							I-CTWD	2-3C	C-X4-C-X23-HXH
VvWRKY 2-4	GI:359478811	6	336	6.31	21.7	Vitis vinifera	IIc	2-4	C-X4-C-X23-HXH
VvWRKY 3-1	GI:48686707	1	317	7.64	58.3	Vitis vinifera	I-NTWD	3-1N	C-X4-C-X22-HXH
							I-CTWD	3-1C	C-X4-C-X23-HXH
VvWRKY 3-2	GI:315272006	*	534	8.22	35.3	Vitis vinifera	IIa	3-2	C-X5-C-X23-HXH
VvWRKY 4	GI:315272008	*	625	8.71	34.4	Vitis vinifera	IIa	4	C-X5-C-X25-HXH
VvWRKY 6-1	GI:359485613	12	753	6.48	64.1	Vitis vinifera	IIb	6-1	C-X5-C-X23-HXH
VvWRKY 6-2	GI:225444291	10	535	6.04	57.5	Vitis vinifera	IIb	6-2	C-X5-C-X23-HXH
VvWRKY 7-1	GI:225458699	18	347	9.36	38.1	Vitis vinifera	IId	7-1	C-X5-C-X23-HXH
VvWRKY 7-2	GI:225438803	7	535	9.57	36.6	Vitis vinifera	IId	7-2	C-X5-C-X23-HXH
VvWRKY 9	GI:225447777	12	798	5.16	52.4	Vitis vinifera	IIb	9	C-X5-C-X23-HXH
VvWRKY 11-1	GI:225466161	4	338	9.49	36.6	Vitis vinifera	IId	11-1	C-X5-C-X23-HXH
VvWRKY 11-2	GI:225445976	11	297	9.73	32.4	Vitis vinifera	IId	11-2	C-X5-C-X23-HXH
VvWRKY 11-3	GI:262091438	*	297	9.73	32.4	Vitis vinifera	IId	1-3	C-X5-C-X23-HXH
VvWRKY 12-1	GI:225453346	15	228	7.68	26.1	Vitis vinifera	IIc	12-1	C-X4-C-X23-HXH
VvWRKY 12-2	GI:225453345	15	228	7.8	26.1	Vitis vinifera	IIc	12-2	C-X4-C-X23-HXH
VvWRKY 13-1	GI:359472522	1	305	5.8	33.4	Vitis vinifera	IIc	13-1	C-X4-C-X23-HXH
VvWRKY 13-1	GI:359472523	1	305	5.81	33.4	Vitis vinifera	IIc	13-1	C-X4-C-X23-HXH
VvWRKY 14	GI:225444177	10	438	5.16	47.5	Vitis vinifera	IIe	14	C-X5-C-X23-HXH
VvWRKY 18	GI:359476150	4	261	9.1	28.9	Vitis vinifera	IIa	18	C-X5-C-X23-HXH
VvWRKY 20-1	GI:359496861	*	604	6.01	65.7	Vitis vinifera	I-NTWD	20-1N	C-X4-C-X22-HXH
							I-CTWD	20-1C	C-X4-C-X23-HXH
VvWRKY 20-2	GI:359494165	19	580	6.27	63.4	Vitis vinifera	I-NTWD	20-2N	C-X4-C-X23-HXH
							I-CTWD	20-2C	C-X4-C-X23-HXH
VvWRKY 20-3	GI:225447598	12	407	5.02	44.8	Vitis vinifera	I-NTWD	20-3N	C-X4-C-X22-HXH
							I-CTWD	20-3C	C-X4-C-X23-HXH
VvWRKY 20-4	GI:359496860	12	514	6.6	56.2	Vitis vinifera	I-NTWD	20-4N	C-X4-C-X23-HXH
							I-CTWD	20-4C	C-X4-C-X23-HXH
VvWRKY 20-5	GI:359494164	19	595	6.8	65	Vitis vinifera	I-NTWD	20-5N	C-X4-C-X23-HXH
							I-CTWD	20-5C	C-X4-C-X22-HXH
VvWRKY 20-6	GI:359485885	12	407	4.8	44.8	Vitis vinifera	I-NTWD	20-6N	C-X4-C-X23-HXH
							I-CTWD	20-6C	C-X4-C-X23-HXH
VvWRKY 21	GI:225437249	7	340	9.84	38	Vitis vinifera	IId	21	C-X5-C-X23-HXH
VvWRKY 22-1	GI:359480165	7	233	6.06	26.8	Vitis vinifera	IIe	22-1	C-X5-C-X23-HXH
VvWRKY 22-2	GI:225454298	15	348	5.73	38	Vitis vinifera	IIe	22-2	C-X5-C-X23-HXH
VvWRKY 22-3	GI:225426142	2	331	5.71	36.6	Vitis vinifera	IIe	22-3	C-X5-C-X23-HXH
VvWRKY 22-4	GI:225464629	*	166	4.7	18.4	Vitis vinifera	IIe	22-4	C-X5-C-X23-HXH
VvWRKY 23	GI:225437606	7	302	6.74	33.8	Vitis vinifera	IIc	23	C-X4-C-X23-HXH
VvWRKY 24	GI:359489647	15	165	9.61	19	Vitis vinifera	IIc	24	C-X4-C-X23-HXH
VvWRKY 28-1	GI:225463412	10	319	6.76	35	Vitis vinifera	IIc	28-1	C-X4-C-X23-HXH
VvWRKY 28-2	GI:225446835	12	311	6.92	34.8	Vitis vinifera	IIc	28-2	C-X4-C-X23-HXH
VvWRKY 30	GI:40846374	*	349	5.02	39.3	Vitis aestivalis	III	30	C-X7-C-X23-HTC
VvWRKY 32-1	GI:225445873	11	499	6.12	53.8	Vitis vinifera	I-NTWD	32-1N	C-X4-C-X22-HXH
							I-CTWD	32-1C	C-X4-C-X23-HXH
VvWRKY 32-2	GI:225430477	4	475	8.47	52.6	Vitis vinifera	I-NTWD	32-2N	C-X4-C-X22-HXH
							I-CTWD	32-2C	C-X4-C-X23-HXH
VvWRKY 33-1	GI:225439574	8	552	7.29	61	Vitis vinifera	I-NTWD	33-1N	C-X4-C-X22-HXH
							I-CTWD	33-1C	C-X4-C-X23-HXH
VvWRKY 33-2	GI:225434421	6	603	6.42	66.3	Vitis vinifera	I-NTWD	33-2N	C-X4-C-X22-HXH
							I-CTWD	33-2C	C-X4-C-X23-HXH
VvWRKY 40-1	GI:225443178	9	311	5.16	52.4	Vitis vinifera	IIa	40-1	C-X5-C-X25-HXH
VvWRKY 40-2	GI:225430340	4	317	8.22	35.3	Vitis vinifera	IIa	40-2	C-X5-C-X23-HXH
VvWRKY 41	GI:225426000	2	342	6.05	38.6	Vitis vinifera	III	41	C-X7-C-X23-HTC
VvWRKY 42	GI:359494147	19	511	9.2	55.1	Vitis vinifera	IIb	42	C-X5-C-X23-HXH
VvWRKY 44	GI:225439779	8	477	8.84	52.3	Vitis vinifera	I-NTWD	44C	C-X4-C-X22-HXH
							I-CTWD	44N	C-X4-C-X23-HXH
VvWRKY 45	GI:225451489	14	182	9.41	20.8	Vitis vinifera	IIc	45	C-X4-C-X23-HXH
VvWRKY 46	GI:225454483	15	349	5.01	39.2	Vitis vinifera	III	46	C-X7-C-X23-HTC
VvWRKY 47	GI:225437767	7	505	8.03	54.7	Vitis vinifera	IIb	47	C-X5-C-X23-HXH
VvWRKY 48	GI:225432004	5	309	5.72	34.4	Vitis vinifera	IIc	48	C-X4-C-X23-HXH
VvWRKY 49	GI:225440394	8	299	5.16	52.4	Vitis vinifera	IIc	49	C-X4-C-X23-HXH
VvWRKY 50	GI:225429590	4	166	5.2	18.9	Vitis vinifera	IIc	50	C-X4-C-X23-HXH
VvWRKY 51-1	GI:359476460	4	136	9.39	15.8	Vitis vinifera	IIc	51-1	C-X4-C-X23-HXH
VvWRKY 51-2	GI:359480857	7	149	9.07	17.2	Vitis vinifera	IIc	51-2	C-X4-C-X23-HXH
VvWRKY 51-3	GI:225466167	4	191	5.58	21.5	Vitis vinifera	IIc	51-3	C-X4-C-X23-HXH
VvWRKY 51-4	GI:359480856	7	193	7.1	21.5	Vitis vinifera	IIc	51-4	C-X4-C-X23-HXH
VvWRKY 53	GI:359490533	16	364	5.45	40	Vitis vinifera	III	53	C-X7-C-X23-HTC
VvWRKY 57-1	GI:225423515	1	305	5.62	33.4	Vitis vinifera	IIc	57-1	C-X4-C-X23-HXH
VvWRKY 57-2	GI:225425363	1	189	9.4	21.3	Vitis vinifera	IIc	57-2	C-X4-C-X23-HXH
VvWRKY 65-1	GI:225443744	10	278	5.14	3.9	Vitis vinifera	IIe	65-1	C-X5-C-X23-HXH
VvWRKY 65-2	GI:225446682	12	244	5.41	26.4	Vitis vinifera	IIe	65-2	C-X5-C-X23-HXH
VvWRKY 65-3	GI:359485307	12	244	5.4	26.4	Vitis vinifera	IIe	65-3	C-X5-C-X23-HXH
VvWRKY 55	GI:225448719	13	364	5.97	40.3	Vitis vinifera	III	55	C-X7-C-X23-HTC
VvWRKY 70-1	GI:225448721	13	313	5.45	35.3	Vitis vinifera	III	70-1	C-X7-C-X23-HTC
VvWRKY 70-2	GI:225439707	8	322	5.49	36.6	Vitis vinifera	III	70-2	C-X7-C-X23-HTC
VvWRKY 72-1	GI:359491334	17	611	7.9	65.7	Vitis vinifera	IIb	72-2	C-X5-C-X23-HXH
VvWRKY 72-2	GI:359488978	14	755	5.85	59.7	Vitis vinifera	IIb	72-2	C-X5-C-X23-HXH
VvWRKY 72-3	GI:359473376	1	547	5.92	59.7	Vitis vinifera	IIb	72-3	C-X5-C-X23-HXH
VvWRKY 74	GI:225463956	14	362	9.68	41.3	Vitis vinifera	IId	74	C-X5-C-X23-HXH
VvWRKY 75	GI:225456341	17	151	9.67	17.7	Vitis vinifera	IIc	75	C-X4-C-X23-HXH
VtWRKY5	GI:183979104	*	529	7.72	57.7	Vitis thunbergii	I-NTWD	Vt5N	C-X4-C-X22-HXH
							I-CTWD	Vt5C	C-X4-C-X23-HXH
VtWRKY7	GI:183979108	*	603	6.42	66.3	Vitis thunbergii	I-NTWD	Vt7N	C-X4-C-X22-HXH
							I-CTWD	Vt7C	C-X4-C-X23-HXH
VtWRKY11	GI:183979106	*	338	9.49	36.6	Vitis thunbergii	IId	Vt11	C-X5-C-X23-HXH
VaWRKY4	GI:40060529	*	311	8.71	34.4	Vitis aestivalis	IIa	Va4	C-X5-C-X23-HXH
VpWRKY1	GI:263199372	*	322	5.58	36.5	Vitis pseudoreticulata	III	Vp1	C-X7-C-X23-HTC
VpWRKY2	GI:290894627	*	499	6.23	53.9	Vitis pseudoreticulata	I-NTWD	Vp2N	C-X4-C-X22-HXH
							I-CTWD	Vp2C	C-X4-C-X23-HXH
VpWRKY3	GI:345104746	*	319	7.67	35.5	Vitis pseudoreticulata	IIa	Vp3	C-X5-C-X23-HXH
VbcWRKY50	GI:163914201	*	127	9.4	14.3	Vitis hybrid cultivar	IId	Vbc50	C-X5-C-X23-HXH

aGenBank protein number
Chr.: chromosome; ORF: open reading frame; *chromosome unknown.