Supervised Clustering Based on DPClusO: Prediction of Plant-Disease Relations Using Jamu Formulas of KNApSAcK Database

Table 3

Statistics of three datasets.

	Parameters	0.7%	0.5%	0.3%
Network statistics	Total pairs	34,454	24,610	14,766
	Minimum correlation	0.596	0.665	0.718
	Number of Jamu formulas	2,779	2,496	2,085
	Average degree	24.8	19.7	14.2
	(Random network: ER)	(24.8±0.0)	(19.7±0.0)	(14.2±0.0)
	(Random network: BA)	(24.7±0.1)	(19.7±0.1)	(14.1±0.1)
	(Random network: CNN)	(24.7±0.4)	(19.7±0.4)	(14.0±0.4)
	Clustering coefficient	0.521	0.520	0.540
	(Random network: ER)	(0.009±0.000)	(0.008±0.000)	(0.007±0.000)
	(Random network: BA)	(0.030±0.001)	(0.028±0.001)	(0.026±0.001)
	(Random network: CNN)	(0.246±0.008)	(0.239±0.008)	(0.233±0.010)
	Number of connected components	69	119	254
	(Random networks: ER, BA, CNN)	(1)	(1)	(1)
	Network diameter	15	17	20
	(Random network: ER)	(4.0±0.0)	(4.0±0.0)	(5.0±0.0)
	(Random network: BA)	(10.8±0.8)	(11.2±1.5)	(10.8±0.9)
	(Random network: CNN)	(14.6±1.9)	(14.1±1.4)	(14.7±1.3)
	Network density	0.008	0.008	0.007
	(Random network: ER)	(0.009±0.000)	(0.008±0.000)	(0.007±0.000)
	(Random network: BA)	(0.009±0.000)	(0.008±0.000)	(0.007±0.000)
	(Random network: CNN)	(0.009±0.000)	(0.008±0.000)	(0.007±0.000)
DPClusO	Total number of clusters	1,746	1,411	938
	Number of clusters with more than 2 Jamu	1,296	873	453
	(%)	(74.2)	(61.9)	(48.3)
	Number of Jamu formulas in the biggest cluster	118	104	89