Differences in Brain Transcriptomes of Closely Related Baikal Coregonid Species

Table 3

Transcription levels of genes in the whitefish and omul brain estimated by real-time PCR.

	Accession	Similarity to mRNA of known genes, %	Accession of mRNA of known genes	𝑄wf ± S.E.	𝑄omul ± S.E.	R ± S.E.
1	GenBank: GR918015	Ependymin related protein 1 (Danio rerio), 79	GenBank: NM_001002416.1	3.7×10^−2±0.4×10^−2	1.5×10^−2±0.12×10^−2	2.79±0.6
2	GenBank: GR918016	Similar to netrin-G1 ligand (Macaca mulatta), 78	GenBank: XM_001090447.1	3.9×10^−4±0.9×10^−4	0.89×10^−4±0.2×10^−4	4.12±0.8
3	GenBank: GR918017	Signal transducer/activator of transcription Stat3 (rbtStat3) mRNA (Oncorhynchus mykiss), 97	GenBank: OMU60333	8.2×10^−4±3.1×10^−4	29.09×10^−4±5×10^−4	0.33±0.05
4	GenBank: GR918020	Fibroblast growth factor 12 (Danio rerio), 81	GenBank: BC124640.1	3.1×10^−2±0.42×10^−2	1.05×10^−2±0.09×10^−4	2.62±0.6
5	GenBank: GR918021	Tumor necrosis factor receptor superfamily, member 9 (Pan troglodytes), 89	GenBank: XM_001157779.1	0.61±0.04	0.27±0.02	2.45±0.6
6	GenBank: GR918018	DTSsa4 Tc1-like DNA transposon (Salmo salar), 86	GenBank: EF685957.1	4.43±0.41	1.3±0.18	3.48±0.5
7	GenBank: GR918022	NADH dehydrogenase subunit 5 (Thymallus thymallus), 85	GenBank: AF270855	8.2×10^−2±0.9×10^−2	3.5×10^−2±0.42×10^−2	2.27±0.24
8	GenBank: GR918019	Na/K ATPase alpha subunit isoform 1c mRNA (Oncorhynchus mykiss), 97	GenBank: AY319389.1	0.86±0.05	2.38±0.21	0.35±0.03

Data represent mean ± S.E. (standard error) of six independent experiments.
𝑄: the number of transcripts normalized to the number of GAPDH gene transcripts.
R: relative expression~𝑄whitefish/𝑄omul.