BioMed Research International

Research Article

Preliminary Characterization of Mitochondrial Genome of Melipona scutellaris, a Brazilian Stingless Bee

Table 1

Annotated genes in M. scutellaris mitogenome, upstream/downstream relations, and similarity analysis.


Reference gene		Upstream gene		Downstream gene		Similarity to reference sequence
Name	OCR*	Name	OCR*	Name	OCR*	Blast algorithm	Best identity	E-value

trnI	2	trnA	2	trnQ	2	blastn	—	—

trnA	34	trnT trnN	27 25	rrnS	30	blastn	92.06	2.00E − 021

trnK	16	*trnQ*	5	trnE trnM	6 4	blastn	93.62	2.00E − 016

trnM	28	*trnX*	22	nad2	27	blastn	95.71	2.00E − 028

nad2	36	trnM	27	trnC	32	tblastx	96.43	2.00E − 018

trnC	32	nad2	32	trnW	30	blastn	—	—

trnW	32	trnC	30	trnY	25	blastn	96.92	6.00E − 028

trnY	26	trnW	25	cox1	25	blastn	—	—

cox1	36	trnY	25	trnL2	20	tblastx	98.33	2.00E − 099

trnL2	20	cox1	20	cox2	20	blastn	—	—

cox2	36	tnrL2	20	tnrD	32	tblastx	96.55	3.00E − 063

trnD	32	cox2	32	atp8	31	blastn	—	—

atp8	35	trnD	31	atp6	34	tblastx	93.75	2.00E − 005

atp6	36	atp8	34	cox3	36	tblastx	94.44	1.00E − 009

cox3	36	atp6	36	trnV	17	tblastx	94.12	4.00E − 027

trnS1	27	trnR nad3	12 10	trnF	19	blastn	96.88	2.00E − 027

trnG	3	cox3	3	nad3 atp8	2 1	blastn	—	—

nad3	36	trnV cox3	17 14	trnR	24	tblastx	95.00	7.00E − 006

trnR	24	nad3	24	trnS1 trnN	12 9	blastn	—	—

trnN	34	rrnL	25	trnA	25	blastn	96.72	9.00E − 026

trnE	12	trnK	6	trnF	7	blastn	—	—

trnF	28	trnS1	19	nad5	15	blastn	—	—

nad5	36	trnF	15	*trnQ*	35	tblastx	95.83	1.00E − 013

trnH	0						—	—

nad4	36	*trnQ*	35	nad4l	28	tblastx	95.00	1.00E − 028

nad4l	33	nad4	28	trnP	26	tblastx	94.74	0.13

trnT	32	nad4l	9	trnA	27	blastn	—	—
trnT	32	*trnQ*	7	trnA	27	blastn	—	—

trnP	35	nad4l	26	nad6	35	blastn	—	—

nad6	35	trnP	36	cob	35	tblastx	94.12	4.00E − 022

cob	36	nad6	35	trnS2	35	tblastx	95.65	1.00E − 011

trnS2	35	cob	35	nad1	35	blastn	100.00	7.00E − 032

nad1	36	trnS2	35	rrnL	34	tblastx	92.86	5.00E − 021

trnL1	2	trnY nad1	1 1	rrnL trnL2	1 1	blastn	—	—

rrnL	36	nad1	34	trnN	25	blastn	95.26	3.00E − 095

trnV	23	cox3	17	nad3	17	blastn	—	—

rrnS	36	trnA	30	tnrQ	29	blastn	95.08	4.00E − 024

OCR: occurrences in different assemblies.
**Genes not found in M. bicolor mitogenome.