Predicting the Types of J-Proteins Using Clustered Amino Acids

Table 4

Results obtained in identifying J-protein functional types with tripeptide case (𝑛=3).

Subfamily	Metrics	Feature dimension of 𝑛=3 for each cluster profile
		CP(13)	CP(11)	CP(9)	CP(8)	CP(5)
		2197	1331	729	512	125
Type I J-protein	Sn	63.49%	74.60%	77.78%	74.60%	60.31%
	Sp	99.56%	98.94%	99.11%	98.76%	98.93%
	MCC	0.74	0.76	0.79	0.75	0.66
Type II J-protein	Sn	37.73%	45.28%	39.62%	49.06%	24.53%
	Sp	100%	99.31%	99.39%	99.05%	99.56%
	MCC	0.60	0.57	0.53	0.57	0.41
Type III J-protein	Sn	99.81%	98.82%	99.09%	98.56%	99.19%
	Sp	44.44%	58.78%	55.72%	62.02%	40.00%
	MCC	0.63	0.68	0.67	0.69	0.56
Type IV J-protein	Sn	0	27.27%	13.64%	31.81%	4.54%
	Sp	100.00%	100.00%	100.00%	100.00%	100.00%
	MCC	0	0.52	0.37	0.56	0.21
OA		93.57%	94.06%	93.98%	94.06%	92.36%