Predicting the Types of J-Proteins Using Clustered Amino Acids

Table 6

Comparative result of SVM with other methods for J-protein types classification.

Subfamily	SVM			Random Forest			Naïve Bayes
	Sn	SP	MCC	Sn	SP	MCC	Sn	SP	MCC
Type I J-protein	74.60%	98.76%	0.75	14.29%	99.55%	0.29	74.60%	92.17%	0.47
Type II J-protein	49.06%	99.05%	0.57	13.33%	99.82%	0.31	54.72%	94.67%	0.39
Type III J-protein	98.56%	62.02%	0.69	99.73%	12.70%	0.31	88.62%	65.83%	0.43
Type IV J-protein	31.81%	100.00%	0.56	4.55%	100.00%	0.21	13.64%	100.00%	0.37
OA	94.06%			89.96%			85.14%