| Protein complex | Subunits | Systematic nomenclature | Miscellaneous nomenclature | Human | Yeast | Trypanosomes |
| | | α1 | Iota | SCL1, YC7 | Tbα1 | | | α2 | C3 | PRE8, Y7 | Tbα2 | | | α3 | C9 | PRE9, Y13 | Tbα3 | | α Type | α4 | C6 | PRE6 | Tbα4 | | | α5 | zeta | PUP2, DOA5 | Tcα5, TbPSA5 | | | α6 | C2 | PRE5 | Tcpr29α6, Tbα6 | | | α7 | C8 | PRE10, YC1 | Tbα7 | | β Type | β1 | Y, delta | PRE3 | Tbβ1 | 20S | β2 | Z | PUP1 | Tbβ2 | | β3 | C10 | PUP3 | Tbβ3 | | β4 | C7 | PRE1 | Tbβ4 | | β5 | X, MB1, epsilon | PRE2, DOA3 | Tbβ5 | | β6 | C5 | PRE7 | Tbβ6 | | β7 | N3, beta | PRE4 | Tbβ7 | | β1i | LMP2, RING12 | | | | β3i | LMP10, MECL1 | | | | β5i | LMP7, RING10 | | |
| | ATPase | RPT1 | 57, MSS1 | YTA3, CIM5 | TcS7 | | RPT2 | 54, P56 | YTA5, mts2 | TcS4 | | RPT3 | 56, Tbp7, P48 | YTA2 | TcS6 | | RPT4 | S10b, p42 | SUG2, CRL3, PLS1 | TcS10b | | RPT5 |
S6′, Tbp1 | YTA1 | TcYTA-1 | | RPT6 | 58, p45, Trip1 | SUG1, CRL3, CIM3/let1 | TcS8 | | | Rpn1 | S2, p97 | HRD2, NAS1/mts4 | TcRpn1, TbRpn1 | | | Rpn2 | S1, p112 | SEN3 | TbRpn2 | | | Rpn3 | S3, p58 | SUN2 | TbRpn3 | 19S | | Rpn5 | p55 | NA55 | TbRpn5 | | | Rpn6 | S9, p44.5 | NAS4 | TbRpn6 | | | Rpn7 | S10a, P44 | | TbRpn7 | | Non ATPase | Rpn8 | S12, p40, MOV 34 | NAS3 | TbRpn8 | | | Rpn9 | S11, p40.5 | NAS7, mts1 | TbRpn9 | | | Rpn10 | S5a, MBP1 | SUN1, MCB1, pus1 | TbRpn10 | | | Rpn11 | S13, Poh1 | MPR1, pad1, mts5 | TbRpn11 | | | Rpn12 | S14, p31 | NIN1/MTS3 | | | | Rpn13 | ADRM1 | DAQ1 | | | | Rpn15 | DSS1, SHFM1 | SEM1 | |
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