Predicting Flavin and Nicotinamide Adenine Dinucleotide-Binding Sites in Proteins Using the Fragment Transformation Method

Figure 2

Atom-type frequencies within NAD-/FAD-binding sites. Frequencies for both backbone (black) and side-chain (white) atoms are shown. (a) Adenosine-binding of NAD. (b) Phosphate-binding of NAD. (c) Nicotinamide-binding of NAD. (d) Adenosine-binding of FAD. (e) Phosphate-binding of FAD. (f) Flavin-binding of FAD. The preferred types of atoms surrounding the different moiety of NAD/FAD are shown.

(a)

(b)

(c)

(d)

(e)

(f)