Predicting Flavin and Nicotinamide Adenine Dinucleotide-Binding Sites in Proteins Using the Fragment Transformation Method

Figure 6

Identification of FAD-binding sites. (a) Chain H of D-amino acid oxidase (PDB ID:1DDO) was the query protein. Templates were constructed from (b) putidaredoxin reductase (chain B; PDB ID:1Q1R), (c) D-amino acid oxidase (chain A; PDB ID:1C0I), and (d) glycine oxidase (chain B; PDB ID:1NG3).

(a)

(b)

(c)

(d)