A Large-Scale Structural Classification of Antimicrobial Peptides

Table 1

Comparison of overlapping identical sequence counts of the twelve AMP databases.

	APD	CAMP	DADP	DAMPD	YAD	BACTIB	BAGEL	PenBase	PhytAMP	RAPD	AVP	HIPdb
APD	2436	2100	744	376	1601	86	39	1	107	55	56	33
CAMP	2100	3052	858	586	1994	122	56	1	145	71	65	33
DADP	744	858	1792	220	772	0	0	0	0	5	13	11
DAMPD	376	586	220	1068	528	31	70	5	19	10	18	11
YADAMP	1601	1994	772	528	2782	113	43	1	60	67	76	49
BACTIBASE	86	122	0	31	113	204	52	0	0	10	0	1
BAGEL	39	56	0	70	43	52	431	0	0	0	1	0
PenBase	1	1	0	5	1	0	0	28	0	0	0	0
PhytAMP	107	145	0	19	60	0	0	0	272	3	10	0
RAPD	55	71	5	10	67	10	0	0	3	119	9	5
AVP	56	65	13	18	76	0	1	0	10	9	604	156
HIPdb	33	33	11	11	49	1	0	0	0	5	156	744