Predicting Long Noncoding RNA and Protein Interactions Using Heterogeneous Network Model

Table 2

The top 10 ranked proteins for lncRNA FTX, HNRNPU-AS1 and MALAT1.

Gene	String ID	Rank	Gene	String ID	Rank
FTX (NONCODE ID: NONHSAT137627)
IGF2BP3	9606.ENSP00000258729	1	TIA1	9606.ENSP00000401371	6
FUS	9606.ENSP00000254108	2	SFRS1	9606.ENSP00000258962	7
IGF2BP2	9606.ENSP00000371634	3	RBFOX2	9606.ENSP00000413035	8
TARDBP	9606.ENSP00000240185	4	EIF2C1	9606.ENSP00000362300	9
EIF2C2	9606.ENSP00000220592	5	QKI	9606.ENSP00000354951	10
HNRNPU-AS1 (NONCODE ID: NONHSAT010657)
IGF2BP1	9606.ENSP00000290341	1	MOV10	9606.ENSP00000350028	6
TARDBP	9606.ENSP00000240185	2	IGF2	9606.ENSP00000338297	7
SFRS1	9606.ENSP00000258962	3	HNRNPU	9606.ENSP00000283179	8
TNRC6B	9606.ENSP00000338371	4	STAU1	9606.ENSP00000360922	9
TNRC6A	9606.ENSP00000379144	5	SFPQ	9606.ENSP00000349748	10
MALAT1 (NONCODE ID: NONHSAT022127)
HNRNPU	9606.ENSP00000283179	1	CDK9	9606.ENSP00000362361	6
RBFOX2	9606.ENSP00000413035	2	CTCF	9606.ENSP00000264010	7
IGF2	9606.ENSP00000338297	3	NXF1	9606.ENSP00000294172	8
STAU1	9606.ENSP00000360922	4	LRRK2	9606.ENSP00000298910	9
MEPCE	9606.ENSP00000308546	5	SSB	9606.ENSP00000260956	10