Research Article

JPPRED: Prediction of Types of J-Proteins from Imbalanced Data Using an Ensemble Learning Method

Table 1

Performance of JPPRED using various feature spaces by 10-fold cross validation.

Feature space AvgSnAcc

SAAC 0.791 0.746
PSSM 0.851 0.808
PseAAC 0.744 0.606
SAAC + PseAAC 0.814 0.766
SAAC + PSSM 0.832 0.847
PseAAC + PSSM 0.863 0.821
SAAC + PseAAC + PSSM 0.875 0.852