Research Article
RF-Phos: A Novel General Phosphorylation Site Prediction Tool Based on Random Forest
Table 7
Scoring metrics using an independent test dataset.
| Methods | Residue = S | Sen (%) | Sp (%) | MCC |
| NetPhosK | 80.13 | 38.79 | 0.10 | GPS 2.1 | 94.79 | 28.62 | 0.14 | NetPhos | 76.55 | 54.20 | 0.16 | PHOSFER | 74.59 | 65.51 | 0.22 | Musite | 55.70 | 87.39 | 0.31 | PhosphoSVM | 63.84 | 81.76 | 0.29 | RF-Phos | 72.00 | 70.00 | 0.41 |
| Methods | Residue = T | Sen (%) | Sp (%) | MCC |
| NetPhosK | 69.12 | 50.82 | 0.06 | GPS 2.1 | 95.59 | 20.84 | 0.07 | NetPhos | 54.41 | 77.43 | 0.12 | PHOSFER | 77.94 | 64.77 | 0.14 | Musite | 48.53 | 93.55 | 0.26 | PhosphoSVM | 70.59 | 78.16 | 0.19 | RF-Phos | 79.00 | 80.00 | 0.50 |
| Methods | Residue = Y | Sen (%) | Sp (%) | MCC |
| NetPhosK | 25.49 | 83.23 | 0.04 | GPS 2.1 | 98.04 | 21.42 | 0.09 | NetPhos | 64.71 | 67.50 | 0.13 | PHOSFER | 62.75 | 59.29 | 0.08 | Musite | 47.06 | 88.77 | 0.20 | PhosphoSVM | 82.35 | 64.18 | 0.18 | RF-Phos | 61.00 | 62.00 | 0.29 |
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