Using the Relevance Vector Machine Model Combined with Local Phase Quantization to Predict Protein-Protein Interactions from Protein Sequences

Table 3

5-fold cross-validation results shown by using our proposed method on the Yeast dataset.

Testing set	Ac (%)	Sn (%)	Sp (%)	MCC (%)
SVM + PSSM + LPQ
1	85.96	84.77	87.13	75.86
2	84.18	82.86	85.43	73.33
3	85.52	84.10	86.97	75.22
4	85.29	84.12	86.47	74.91
5	85.76	86.16	88.45	75.55
Average	85.34 ± 0.69	84.40 ± 1.20	86.89 ± 1.09	74.97 ± 0.98
RVM + PSSM + LPQ
1	92.76	92.73	92.79	86.56
2	93.79	93.27	93.41	88.34
3	91.28	92.12	90.43	84.08
4	92.27	92.02	92.50	85.72
5	93.17	93.02	93.32	87.27
Average	92.65 ± 0.95	92.63 ± 0.55	92.67 ± 1.40	86.40 ± 1.61