Using the Relevance Vector Machine Model Combined with Local Phase Quantization to Predict Protein-Protein Interactions from Protein Sequences

Table 4

Predicting ability of different methods on the Yeast dataset.

Model	Testing set	Ac (%)	Sn (%)	Pe (%)	MCC (%)
Guo et al.’s work [20]	ACC	89.33 ± 2.67	89.93 ± 3.60	88.77 ± 6.16	N/A
	AC	87.36 ± 1.38	87.30 ± 4.68	87.82 ± 4.33	N/A
Zhou et al.’s work [25]	SVM + LD	88.56 ± 0.33	87.37 ± 0.22	89.50 ± 0.60	77.15 ± 0.68
Yang et al.’s work [26]	Cod1	75.08 ± 1.13	75.81 ± 1.20	74.75 ± 1.23	N/A
	Cod2	80.04 ± 1.06	76.77 ± 0.69	82.17 ± 1.35	N/A
	Cod3	80.41 ± 0.47	78.14 ± 0.90	81.66 ± 0.99	N/A
	Cod4	86.15 ± 1.17	81.03 ± 1.74	90.24 ± 1.34	N/A
You et al.’s work [27]	PCA-EELM	87.00 ± 0.29	86.15 ± 0.43	87.59 ± 0.32	77.36 ± 0.44
The proposed method	RVM	92.65 ± 0.95	92.63 ± 0.55	92.67 ± 1.40	86.40 ± 1.61