BioMed Research International

Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data


Publishing date
24 Apr 2015
Status
Published
Submission deadline
05 Dec 2014

Lead Editor

1Harbin Institute of Technology, Harbin, China

2Indiana University, Indianapolis, USA

3Wayne State University, Detroit, USA

4National Centre for Mathematics and Computer Science, Amsterdam, Netherlands

5Harbin Engineering University, Harbin, China


Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data

Description

Next-generation sequencing (NGS) technologies have revolutionarily reshaped the landscape of ‘-omics’ research areas. With its significantly lower costs and higher throughput, NGS has played increasing roles in genomic, transcriptomic, and epigenome research. Despite such advances, the development of computing infrastructure and data analysis methods for efficiently processing huge datasets is still behind the speed of data production. The plethora of information that emerges from large-scale next-generation sequencing experiments has triggered the development of bioinformatics tools and methods for efficient analysis, interpretation, and visualization of NGS data. Such methods and tools will substantially promote the life-science community to better and efficiently understand the underlying biological principles and mechanisms.

We invite investigators to contribute original research articles as well as review articles that aim at development of bioinformatics method and biological interpretation for next-generation sequencing data. We are interested in articles that develop new bioinformatics approaches, present novel platforms and systems, and describe concise models well explaining the biological context from the NGS data. Articles describing NGS application in relation to genetics, metagenomics, and clinical studies are also welcome.

Potential topics include, but are not limited to:

  • Recent development on NGS technology and new experiment methodology
  • NGS data alignment, assembly, base calling, and quality evaluation based on whole genome and whole exome sequencing
  • NGS data management, simulation, and visualization
  • Bioinformatics methods and biological interpretation for DNA-seq, RNA-seq, ChIP-seq, and DNase I-seq data
  • Disease and genetics associations studies using NGS data
  • Methodology and systems supporting clinical sequencing applications and personalized medicine
  • Plant, microbiome, and virome applications using NGS technology

Articles

  • Special Issue
  • - Volume 2015
  • - Article ID 690873
  • - Editorial

Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data

Guohua Wang | Yunlong Liu | ... | Weixing Feng
  • Special Issue
  • - Volume 2015
  • - Article ID 757530
  • - Research Article

Understanding Transcription Factor Regulation by Integrating Gene Expression and DNase I Hypersensitive Sites

Guohua Wang | Fang Wang | ... | Yadong Wang
  • Special Issue
  • - Volume 2015
  • - Article ID 570568
  • - Research Article

How to Isolate a Plant’s Hypomethylome in One Shot

Elisabeth Wischnitzki | Eva Maria Sehr | ... | Silvia Fluch
  • Special Issue
  • - Volume 2015
  • - Article ID 167249
  • - Research Article

mmnet: An R Package for Metagenomics Systems Biology Analysis

Yang Cao | Xiaofei Zheng | ... | Xiaochen Bo
  • Special Issue
  • - Volume 2015
  • - Article ID 831352
  • - Review Article

Survey of Programs Used to Detect Alternative Splicing Isoforms from Deep Sequencing Data In Silico

Feng Min | Sumei Wang | Li Zhang
  • Special Issue
  • - Volume 2015
  • - Article ID 861402
  • - Research Article

MicroRNA Promoter Identification in Arabidopsis Using Multiple Histone Markers

Yuming Zhao | Fang Wang | Liran Juan
  • Special Issue
  • - Volume 2015
  • - Article ID 238139
  • - Research Article

Constructing a Genome-Wide LD Map of Wild A. gambiae Using Next-Generation Sequencing

Xiaohong Wang | Yaw A. Afrane | ... | Jun Li
  • Special Issue
  • - Volume 2015
  • - Article ID 647389
  • - Research Article

Genetic Interactions Explain Variance in Cingulate Amyloid Burden: An AV-45 PET Genome-Wide Association and Interaction Study in the ADNI Cohort

Jin Li | Qiushi Zhang | ... | Li Shen
  • Special Issue
  • - Volume 2015
  • - Article ID 979530
  • - Research Article

Active Microbial Communities Inhabit Sulphate-Methane Interphase in Deep Bedrock Fracture Fluids in Olkiluoto, Finland

Malin Bomberg | Mari Nyyssönen | ... | Merja Itävaara
  • Special Issue
  • - Volume 2015
  • - Article ID 892013
  • - Research Article

454-Pyrosequencing Analysis of Bacterial Communities from Autotrophic Nitrogen Removal Bioreactors Utilizing Universal Primers: Effect of Annealing Temperature

Alejandro Gonzalez-Martinez | Alejandro Rodriguez-Sanchez | ... | Jesus Gonzalez-Lopez
BioMed Research International
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Acceptance rate8%
Submission to final decision110 days
Acceptance to publication24 days
CiteScore5.300
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