Comparative and Functional Genomics
Volume 2007 (2007), Article ID 47304, 7 pages
doi:10.1155/2007/47304
Meeting Report

eGenomics: Cataloguing Our Complete Genome Collection III

Dawn Field,1 George Garrity,2 Tanya Gray,1 Jeremy Selengut,3 Peter Sterk,4 Nick Thomson,5 Tatiana Tatusova,6 Guy Cochrane,4 Frank Oliver Glöckner,7 Renzo Kottmann,7 Allyson L. Lister,8 Yoshio Tateno,9 and Robert Vaughan4

1Molecular Evolution and Bioinformatics Section, Oxford Centre for Ecology and Hydrology, Mansfield Road, Oxford, Oxfordshire OX1 3SR, UK
2Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing 48824, MI, USA
3The Institute for Genomic Research, 9712 Medical Center Drive, Rockville 20850, MD, USA
4European Molecular Biology Laboratory Outstation–The European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
5The Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
6National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda 20894, MD, USA
7Microbial Genomics Group, Max Planck Institute for Marine Microbiology and International University Bremen, Bremen 28359, Germany
8CISBAN and School of Computing Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK
9Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Shizuoka 441-8540, Japan

Received 28 December 2006; Accepted 28 December 2006

Copyright © 2007 Dawn Field et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Linked References

  1. D. Field, G. Garrity, and N. Morrison, et al., “Meeting report: eGenomics: cataloguing our complete genome collection I,” Comparative and Functional Genomics, vol. 6, pp. 357–362, 2006.
  2. J. B. H. Martiny and D. Field, “Ecological perspectives on the sequenced genome collection,” Ecology Letters, vol. 8, no. 12, pp. 1334–1345, 2005.
  3. D. Field, N. Morrison, J. Selengut, and P. Sterk, “Meeting report: eGenomics: cataloguing our complete genome collection II,” OMICS: A Journal of Integrative Biology, vol. 10, no. 2, pp. 100–104, 2006.
  4. S. L. Baldauf, D. Bhattacharya, J. Cockrill, P. Hugenholtz, J. Pawlowski, and A. G. B. Simpson, “The tree of life: an overview,” in Assembling the Tree of Life, J. Cracraft and M. J. Donoghue, Eds., pp. 43–75, Oxford University Press, Oxford, UK, 2004.
  5. R. A. Edwards, B. Rodriguez-Brito, and L. Wegley, et al., “Using pyrosequencing to shed light on deep mine microbial ecology under extreme hydrogeologic conditions,” BMC Genomics, vol. 7, p. 57, 2006.
  6. R. Edwards, “Random Community Genomics,” 2006, http://phagesdsuedu/~rob/.
  7. N. Morrison, G. Cochrane, and N. Faruque, et al., “Concept of sample in OMICS technology,” OMICS: A Journal of Integrative Biology, vol. 10, no. 2, pp. 127–137, 2006.
  8. D. Field and S.-A. Sansone, “A special issue on data standards,” OMICS: A Journal of Integrative Biology, vol. 10, no. 2, pp. 84–93, 2006.
  9. G. Garrity and C. Lyons, “Future-proofing biological nomenclature,” OMICS: A Journal of Integrative Biology, vol. 7, no. 1, pp. 31–33, 2003.
  10. T. Lombardot, R. Kottmann, and H. Pfeffer, et al., “Megx.net—database resources for marine ecological genomics,” Nucleic Acids Research, vol. 34, Database issue, pp. D390–D393, 2006.
  11. K. Liolios, N. Tavernarakis, P. Hugenholtz, and N. C. Kyrpides, “The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide,” Nucleic Acids Research, vol. 34, Database issue, pp. D332–D334, 2006.
  12. P. L. Whetzel, R. R. Brinkman, and H. C. Causton, et al., “Development of FuGO: an ontology for functional genomics investigations,” OMICS: A Journal of Integrative Biology, vol. 10, no. 2, pp. 199–204, 2006.
  13. F. E. Angly, B. Felts, and M. Breitbart, et al., “The marine viromes of four oceanic regions,” PLoS Biology, vol. 4, no. 11, pp. 2121–2131, 2006.
  14. F. O. Glöckner, M. Kube, and M. Bauer, et al., “Complete genome sequence of the marine planctomycete Pirellula sp. strain 1,” Proceedings of the National Academy of Sciences of the United States of America, vol. 100, no. 14, pp. 8298–8303, 2003.
  15. R. Rabus, A. Ruepp, and T. Frickey, et al., “The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments,” Environmental Microbiology, vol. 6, no. 9, pp. 887–902, 2004.
  16. M. Bauer, M. Kube, and H. Teeling, et al., “Whole genome analysis of the marine Bacteroidetes ‘Gramella forsetii’ reveals adaptations to degradation of polymeric organic matter,” Environmental Microbiology, vol. 8, no. 12, pp. 2201–2213, 2006.