Volume 3 [96 articles]

• In This Issue
  Volume 3 (2002), Issue 1, Pages 1-2
• Expression Profiling of All Protein-Coding Genes in Wild-Type and Three DNA Repair-Deficient Substrains of Escherichia coli K-12, Camilla Salmelin and Juhani Vilpo
  Volume 3 (2002), Issue 1, Pages 3-13
• Conference Report: The ESF Programme on Integrated Approaches for Functional Genomics. Workshop on ‘Data Integration in Functional Genomics and Proteomics’, Pierre-Alain Binz, Annette Martin, Mike Taussig, and Antoine de Daruvar
  Volume 3 (2002), Issue 1, Pages 16-21
• Integrating Genotypic Data With Transcriptomic and Proteomic Data, Denis C. Shields and Aisling M. O'Halloran
  Volume 3 (2002), Issue 1, Pages 22-27
• Advancing Post-Genome Data and System Integration Through Machine Learning, Francisco Azuaje
  Volume 3 (2002), Issue 1, Pages 28-31
• REALIS: Postgenomic Analysis of Listeria Monocytogenes, Uwe Kärst and The REALIS Consortium
  Volume 3 (2002), Issue 1, Pages 32-34
• RIBDB: An SRS Based Infrastructure for REALIS, Peter Rice, Bijay Jassal, and Antoine de Daruvar
  Volume 3 (2002), Issue 1, Pages 35-36
• From Gene Regulation to Gene Function: Regulatory Networks in Bacillus Subtilis, Colin R. Harwood and Ivan Moszer
  Volume 3 (2002), Issue 1, Pages 37-41
• Ontology Based Document Enrichment in Bioinformatics, Robert Stevens
  Volume 3 (2002), Issue 1, Pages 42-46
• TEMBLOR – Perspectives of EBI Database Services, Henning Hermjakob and Rolf Apweiler
  Volume 3 (2002), Issue 1, Pages 47-50
• Discovery of Single Nucleotide Polymorphisms and Mutations by Pyrosequencing, Mostafa Ronaghi and Elahe Elahi
  Volume 3 (2002), Issue 1, Pages 51-56
• High-Throughput SNP Genotyping, Suzanne Jenkins and Neil Gibson
  Volume 3 (2002), Issue 1, Pages 57-66
• SNP and Mutation Data on the Web – Hidden Treasures for Uncovering, Michael R. Barnes
  Volume 3 (2002), Issue 1, Pages 67-74
• Website Update: A New Graphical User Interface to EMBOSS, Tim J. Carver and Lisa J. Mullan
  Volume 3 (2002), Issue 1, Pages 75-78
• Conference Calendar
  Volume 3 (2002), Issue 1, Pages 79-80
• Current Awareness on Comparative and Functional Genomics
  Volume 3 (2002), Issue 1, Pages 81-88
• In This Issue
  Volume 3 (2002), Issue 2, Pages 89-90
• StressDB: A Locally Installable Web-Based Relational Microarray Database Designed for Small User Communities, Madhusmita Mitra, Nigam Shah, Lukas Mueller, Scuth Pin, and Nina Fedoroff
  Volume 3 (2002), Issue 2, Pages 91-96
• A European Pathogenic Microorganism Proteome Database: Construction and Maintenance, Klaus-Peter Pleißner, Till Eifert, and Peter R. Jungblut
  Volume 3 (2002), Issue 2, Pages 97-100
• REGIA, An EU Project on Functional Genomics of Transcription Factors From Arabidopsis Thaliana, Javier Paz-Ares and The REGIA Consortium
  Volume 3 (2002), Issue 2, Pages 102-108
• The REGIA Database (RegiaDB): Status, Limitations and Future Developments, Ramon Alonso-Allende, José M. Fernández-González, Osvaldo Graña, and Alfonso Valencia
  Volume 3 (2002), Issue 2, Pages 109-114
• The Informatics for Making Sense of the Genome: A Progress Report From the BioPathways Consortium, Eric K. Neumann and Vincent Schachter
  Volume 3 (2002), Issue 2, Pages 115-118
• The Patentability of Biomolecules – Does Online Bioinformatics Compromise Novelty?, Anton Hutter
  Volume 3 (2002), Issue 2, Pages 119-126
• MaizeDB – A Functional Genomics Perspective, Mary Polacco, Ed Coe, Zhiwei Fang, Denis Hancock, Hector Sanchez-Villeda, and Steve Schroeder
  Volume 3 (2002), Issue 2, Pages 128-131
• Gramene: Development and Integration of Trait and Gene Ontologies for Rice, Pankaj Jaiswal, Doreen Ware, Junjian Ni, Kuan Chang, Wei Zhao, Steven Schmidt, Xiaokang Pan, Kenneth Clark, Leonid Teytelman, Samuel Cartinhour, Lincoln Stein, and Susan McCouch
  Volume 3 (2002), Issue 2, Pages 132-136
• The Plant Ontology™ Consortium and Plant Ontologies, The Plant Ontology Consortium
  Volume 3 (2002), Issue 2, Pages 137-142
• Advanced Mass Spectrometric Methods for the Rapid and Quantitative Characterization of Proteomes, Richard D. Smith
  Volume 3 (2002), Issue 2, Pages 143-150
• Differentiation of Plant Cells During Symbiotic Nitrogen Fixation, Ben Trevaskis, Gillian Colebatch, Guilhem Desbrosses, Maren Wandrey, Stefanie Wienkoop, Gerhard Saalbach, and Michael Udvardi
  Volume 3 (2002), Issue 2, Pages 151-157
• Deleteagene: A Fast Neutron Deletion Mutagenesis-Based Gene Knockout System for Plants, Xin Li, Michael Lassner, and Yuelin Zhang
  Volume 3 (2002), Issue 2, Pages 158-160
• An Introduction to the China Rice Functional Genomics Program, Yongbiao Xue and Zhihong Xu
  Volume 3 (2002), Issue 2, Pages 161-163
• Development and Utilization of Tomato Microarrays for the Solanaceae, Shanna Moore, Paxton Payton, and Jim Giovannoni
  Volume 3 (2002), Issue 2, Pages 164-164
• Frequent Genic Rearrangements in Two Regions of Grass Genomes Identified by Comparative Sequence Analysis, Wusirika Ramakrishna, Jianxin Ma, Phillip SanMiguel, John Emberton, Jorge Dubcovsky, Bryan A Shiloff, Zeyu Jiang, Nils Rostoks, Carlos S. Busso, Matthew Ogden, Eric Linton, Andris Kleinhofs, Katrien M. Devos, Joachim Messing, and Jeffrey L. Bennetzen
  Volume 3 (2002), Issue 2, Pages 165-166
• Computational Comparative Genomics of Eu- and Prokaryotes, Clemens Suter-Crazzolara and Günther Kurapkat
  Volume 3 (2002), Issue 2, Pages 167-168
• ISYS (Integrated SYStem): A Platform for Integrating Heterogeneous Bioinformatic Resources, Damian Gessler
  Volume 3 (2002), Issue 2, Pages 169-175
• Meeting Review: Plant Bioinformatics at the NSF and NPGI (PAMGX Satellite) Meetings, Richard Bruskiewich
  Volume 3 (2002), Issue 2, Pages 176-176
• Announcement: SPRIG (A new Initiative in Bioinformatics Networking)
  Volume 3 (2002), Issue 2, Pages 177-177
• Meeting Highlights: Plant, Animal and Microbe Genomes X, Jo Wixon and Jo Dicks
  Volume 3 (2002), Issue 2, Pages 178-193
• Featured Organism: Schizosaccharomyces pombe, The Fission Yeast, Jo Wixon
  Volume 3 (2002), Issue 2, Pages 194-204
• Meeting Review: Joint Prince Henry's Institute of Medical Research and Monash Institute of Reproduction and Development Symposium – Reproductive Genomics, Gerard Gibbs and Moira K. O'Bryan
  Volume 3 (2002), Issue 2, Pages 205-208
• Conference Calendar
  Volume 3 (2002), Issue 2, Pages 209-210
• Current Awareness on Comparative and Functional Genomics
  Volume 3 (2002), Issue 2, Pages 211-218
• In This Issue
  Volume 3 (2002), Issue 3, Pages 219-220
• Upstream – News in Genomics
  Volume 3 (2002), Issue 3, Pages 221-225
• Studying the Functional Genomics of Stress Responses in Loblolly Pine With the Expresso Microarray Experiment Management System, Lenwood S. Heath, Naren Ramakrishnan, Ronald R. Sederoff, Ross W. Whetten, Boris I. Chevone, Craig A. Struble, Vincent Y. Jouenne, Dawei Chen, Leonel van Zyl, and Ruth Grene
  Volume 3 (2002), Issue 3, Pages 226-243
• Overlapping Antisense Transcription in the Human Genome, M. E. Fahey, T. F. Moore, and D. G. Higgins
  Volume 3 (2002), Issue 3, Pages 244-253
• Mimotopes and Proteome Analyses Using Human Genomic and cDNA Epitope Phage Display, Mullaney P. B., Marks D. J., and Pallavicini G. M.
  Volume 3 (2002), Issue 3, Pages 254-263
• Meeting Review: 2002 O'Reilly Bioinformatics Technology Conference, Damian Counsell
  Volume 3 (2002), Issue 3, Pages 264-269
• Meeting Review: Bioinformatics and Medicine – From Molecules to Humans, Virtual and Real, Roslin Russell
  Volume 3 (2002), Issue 3, Pages 270-276
• Meeting Review: Epigenetics in Development and Disease, Andrew J. Mungall
  Volume 3 (2002), Issue 3, Pages 277-281
• Website Review: How to Get the Best From Fission Yeast Genome Data, Valerie Wood and Jürg Bähler
  Volume 3 (2002), Issue 3, Pages 282-288
• Conference Calendar
  Volume 3 (2002), Issue 3, Pages 289-291
• Current Awareness on Comparative and Functional Genomics
  Volume 3 (2002), Issue 3, Pages 293-304
• In This Issue
  Volume 3 (2002), Issue 4, Pages 305-305
• Heterologous Array Analysis in Pinaceae: Hybridization of Pinus TaedacDNA Arrays With cDNA From Needles and Embryogenic Cultures of P. Taeda, P. Sylvestris or Picea Abies, Leonel van Zyl, Sara von Arnold, Peter Bozhkov, Yongzhong Chen, Ulrika Egertsdotter, John MacKay, Ronald R. Sederoff, Jing Shen, Lyubov Zelena, and David H. Clapham
  Volume 3 (2002), Issue 4, Pages 306-318
• Harvesting the Mouse Genome, Marc Botcherby
  Volume 3 (2002), Issue 4, Pages 319-324
• A Special Section of Reviews From BμG@S 2002: 1st Symposium of the Wellcome Trust Funded Multi-Collaborative Microbial Pathogen Microarray Facility
  Volume 3 (2002), Issue 4, Pages 325-325
• The 1st Symposium of the Wellcome Trust-Funded Multi-Collaborative Microbial Pathogen Microarray Facility—BμG@S 2002: ‘Bacterial Pathogens, Microarrays and Functional Genomics’, Philip D. Butcher
  Volume 3 (2002), Issue 4, Pages 326-329
• Microarrays for Bacterial Pathogens — Hope or Hype?, Brendan W. Wren
  Volume 3 (2002), Issue 4, Pages 330-332
• Microarrays for Microbes: the BμG@S Approach, Jason Hinds, Kenneth G. Laing, Joseph A. Mangan, and Philip D. Butcher
  Volume 3 (2002), Issue 4, Pages 333-337
• Microarray Analysis of Campylobacter Jejuni: To the Guts of the Problem!, Nick Dorrell, Olivia L. Champion, and Brendan W. Wren
  Volume 3 (2002), Issue 4, Pages 338-341
• Microarray-Based Comparative Genomics: Genome Plasticity in Mycobacterium bovis, Jackie Inwald, Jason Hinds, James Dale, Si Palmer, Philip Butcher, R. Glyn Hewinson, and Stephen V. Gordon
  Volume 3 (2002), Issue 4, Pages 342-344
• In Vitro Gene Expression Dissected: Chemostat Surgery for Mycobacterium Tuberculosis, Brian W. James, Joanna Bacon, Tobias Hampshire, Kim Morley, and Philip D. Marsh
  Volume 3 (2002), Issue 4, Pages 345-347
• The Heat Shock Response of Mycobacterium Tuberculosis: Linking Gene Expression, Immunology and Pathogenesis, Graham R. Stewart, Lorenz Wernisch, Richard Stabler, Joseph A. Mangan, Jason Hinds, Ken G. Laing, Philip D. Butcher, and Douglas B. Young
  Volume 3 (2002), Issue 4, Pages 348-351
• Microarray Analysis of Bacterial Gene Expression: Towards the Regulome, Sharon L. Kendall, Farahnaz Movahedzadeh, Andreas Wietzorrek, and Neil G. Stoker
  Volume 3 (2002), Issue 4, Pages 352-354
• Separated at Birth? Microarray Analysis of Two Strikingly Similar Yersinia Species, S. J. Hinchliffe, K. E. Isherwood, R. A. Stabler, P. C. F. Oyston, J. Hinds, R. W. Titbal, and B. W. Wren
  Volume 3 (2002), Issue 4, Pages 355-357
• Haemophilus Influenzae Microarrays: Virulence and Vaccines, Tahir R. Ali, J. Simon Kroll, and Paul R. Langford
  Volume 3 (2002), Issue 4, Pages 358-361
• Microarrays for Public Health: Genomic Epidemiology of Tuberculosis, Jamila Shafi, Peter W. Andrew, and Michael R. Barer
  Volume 3 (2002), Issue 4, Pages 362-365
• The Use of Microarray Technology for the Analysis of Streptococcus Pneumoniae, Jackie McCluskey, Christopher G. Dowson, and Timothy J. Mitchell
  Volume 3 (2002), Issue 4, Pages 366-368
• BμG@Sbase—a Microarray Database and Analysis Tool, Adam A. Witney and Jason Hinds
  Volume 3 (2002), Issue 4, Pages 369-371
• Can Replication Save Noisy Microarray Data?, Lorenz Wernisch
  Volume 3 (2002), Issue 4, Pages 372-374
• The Curse of Normalization, Olaf Wolkenhauer, Carla Möller-Levet, and Fatima Sanchez-Cabo
  Volume 3 (2002), Issue 4, Pages 375-379
• Meeting Review: Bioinformatics of Biochips: Accelerating Discovery in Functional Genomics, Douglas Roy, Thorsten Forster, Sean McGeever, Kevin Robertson, and Peter Ghazal
  Volume 3 (2002), Issue 4, Pages 380-386
• Announcement: Standards and Ontologies for Functional Genomics (SOFG) Conference
  Volume 3 (2002), Issue 4, Pages 387-387
• Current Awareness on Comparative and Functional Genomics
  Volume 3 (2002), Issue 4, Pages 389-396
• In This Issue
  Volume 3 (2002), Issue 5, Pages 397-397
• Upstream—News in Genomics
  Volume 3 (2002), Issue 5, Pages 398-404
• A Mathematical Model for Suppression Subtractive Hybridization, Chetan Gadgil, Anette Rink, Craig Beattie, and Wei-Shou Hu
  Volume 3 (2002), Issue 5, Pages 405-422
• A Computational Strategy for Protein Function Assignment Which Addresses the Multidomain Problem, A. J. Pérez, A. Rodríguez, O. Trelles, and G. Thode
  Volume 3 (2002), Issue 5, Pages 423-440
• Meeting Review: ESF Workshop on ‘Impact of Nucleic Acid Chemistry on Gene Function Analysis: Antisense, Aptamers, Ribozymes and RNAi’, Kathrin Heermeier, Hans Prydz, Jutta Reinhard-Rupp, and Joachim Engels
  Volume 3 (2002), Issue 5, Pages 441-446
• From Genotype to Phenotype: Linking Bioinformatics and Medical Informatics Ontologies, Ele Holloway
  Volume 3 (2002), Issue 5, Pages 447-450
• CCP11 Group Meeting—Towards the Functional Analysis of Microarrays, Clare Sansom
  Volume 3 (2002), Issue 5, Pages 451-454
• The 50th ASMS Conference on Mass Spectrometry and Allied Topics, Francesco L. Brancia
  Volume 3 (2002), Issue 5, Pages 455-458
• Conference Calendar
  Volume 3 (2002), Issue 5, Pages 459-460
• Current Awareness on Comparative and Functional Genomics
  Volume 3 (2002), Issue 5, Pages 461-468
• In This Issue
  Volume 3 (2002), Issue 6, Pages 469-469
• Proteome Analysis of the Plasma Membrane of Mycobacterium Tuberculosis, Sudhir Sinha, Shalini Arora, K. Kosalai, Abdelkader Namane, Alex S. Pym, and Stewart T. Cole
  Volume 3 (2002), Issue 6, Pages 470-483
• Intelligent Systems for Molecular Biology 2002 (ISMB02), K. Cara Woodwark
  Volume 3 (2002), Issue 6, Pages 484-486
• Correct Assignment of Homology is Crucial When Genomics Meets Molecular Evolution, Mohamed Zouine, Quentin Sculo, and Bernard Labedan
  Volume 3 (2002), Issue 6, Pages 488-493
• Endogenous Retroviruses and Human Evolution, Konstantin Khodosevich, Yuri Lebedev, and Eugene Sverdlov
  Volume 3 (2002), Issue 6, Pages 494-498
• Learning About Gene Regulatory Networks From Gene Deletion Experiments, Thomas Schlitt and Alvis Brazma
  Volume 3 (2002), Issue 6, Pages 499-503
• The Evolution of Light Stress Proteins in Photosynthetic Organisms, Mounia Heddad and Iwona Adamska
  Volume 3 (2002), Issue 6, Pages 504-510
• Heterologous Expression and Purification Systems for Structural Proteomics of Mammalian Membrane Proteins, Isabelle Mus-Veteau
  Volume 3 (2002), Issue 6, Pages 511-517
• The Annotation of RNA Motifs, Neocles B. Leontis and Eric Westhof
  Volume 3 (2002), Issue 6, Pages 518-524
• Flowering Buds of Globular Proteins: Transpiring Simplicity of Protein Organization, Igor N. Berezovsky and Edward N. Trifonov
  Volume 3 (2002), Issue 6, Pages 525-534
• International Summer School, ‘ From Genome to Life’, Jo Wixon
  Volume 3 (2002), Issue 6, Pages 535-550
• Current Awareness on Comparative and Functional Genomics
  Volume 3 (2002), Issue 6, Pages 551-562