Volume 5 [91 articles]

• Identification and Analysis of Novel Tandem Repeats in the Cell Surface Proteins of Archaeal and Bacterial Genomes Using Computational Tools, S. Adindla, K. K. Inampudi, K. Guruprasad, and L. Guruprasad
  Volume 5 (2004), Issue 1, Pages 2-16
• A Survey of Nucleotide Cyclases in Actinobacteria: Unique Domain Organization and Expansion of the Class III Cyclase Family in Mycobacterium tuberculosis, Avinash R. Shenoy, K. Sivakumar, A. Krupa, N. Srinivasan, and Sandhya S. Visweswariah
  Volume 5 (2004), Issue 1, Pages 17-38
• ArraySolver: An Algorithm for Colour-Coded Graphical Display and Wilcoxon Signed-Rank Statistics for Comparing Microarray Gene Expression Data, Haseeb Ahmad Khan
  Volume 5 (2004), Issue 1, Pages 39-47
• Modelling for Integration With Proteins, Networks and Signals, Ray Paton
  Volume 5 (2004), Issue 1, Pages 50-51
• Enabling Proteomics: The Need for an Extendable ‘Workbench’ for User-Configurable Solutions, Robert J. Beynon
  Volume 5 (2004), Issue 1, Pages 52-55
• UTOPIA—User-Friendly Tools for Operating Informatics Applications, S. R. Pettifer, J. R. Sinnott, and T. K. Attwood
  Volume 5 (2004), Issue 1, Pages 56-60
• ProbSeq—A Fragmentation Model for Interpretation of Electrospray Tandem Mass Spectrometry Data, John Skilling, Richard Denny, Keith Richardson, Phillip Young, Thérèse McKenna, Iain Campuzano, and Mark Ritchie
  Volume 5 (2004), Issue 1, Pages 61-68
• Signal Analysis on Strings for Immune-Type Pattern Recognition, Nikolaos D. Atreas, Costas Karanikas, and Persefoni Polychronidou
  Volume 5 (2004), Issue 1, Pages 69-74
• MicroCore: Mapping Genome Expression to Cell Pathways and Networks, Manish Patel and Sylvia Nagl
  Volume 5 (2004), Issue 1, Pages 75-78
• The Evolution of Protein Interaction Networks in Regulatory Proteins, Gregory D. Amoutzias, David L. Robertson, and Erich Bornberg-Bauer
  Volume 5 (2004), Issue 1, Pages 79-84
• Computational Aspects of Protein Functionality, R. C. Paton and C.-H. Toh
  Volume 5 (2004), Issue 1, Pages 85-90
• A Formal Language-Based Approach in Biology, Marian Gheorghe and Victor Mitrana
  Volume 5 (2004), Issue 1, Pages 91-94
• Rewriting Systems and the Modelling of Biological Systems, Jean-Louis Giavitto, Grant Malcolm, and Olivier Michel
  Volume 5 (2004), Issue 1, Pages 95-99
• Individual-Based Modelling of Bacterial Ecologies and Evolution, C. Vlachos, R. Gregory, R. C. Paton, J. R. Saunders, and Q. H. Wu
  Volume 5 (2004), Issue 1, Pages 100-104
• Current Awareness on Comparative and Functional Genomics
  Volume 5 (2004), Issue 1, Pages 108-114
• In This Issue
  Volume 5 (2004), Issue 2, Pages 115-115
• A Fragment of 21 ORFs Around the Direct Repeat (DR) Region of Mycobacterium tuberculosis is Absent From the Other Sequenced Mycobacterial Genomes: Implications for the Evolution of the DR Region, Karina Caimi and Angel Cataldi
  Volume 5 (2004), Issue 2, Pages 116-122
• Three Novel Pigmentation Mutants Generated by Genome-Wide Random ENU Mutagenesis in the Mouse, Vicky Tsipouri, John A. Curtin, Pat M. Nolan, Lucie Vizor, Claire A. Parsons, Colin M. Clapham, Ian D. Latham, Lesley J. Rooke, Jo E. Martin, Jo Peters, A. Jackie Hunter, Derek Rogers, Sohaila Rastan, Steve D.M. Brown, Elizabeth M.C. Fisher, Nigel K. Spurr, and Ian C. Gray
  Volume 5 (2004), Issue 2, Pages 123-127
• Phylogenetics in the Bioinformatics Culture of Understanding, Robin G. Allaby and Mathew Woodwark
  Volume 5 (2004), Issue 2, Pages 128-146
• A Special Section of Articles From the ESF Programme on Functional Genomics Workshop: ‘Data Integration in Functional Genomics and Proteomics: Application to Biological Pathways’
  Volume 5 (2004), Issue 2, Pages 147-147
• The ESF Programme on Functional Genomics Workshop on ‘Data Integration in Functional Genomics: Application to Biological Pathways’, Pierre-Alain Binz, Henning Hermjakob, and Paul van der Vet
  Volume 5 (2004), Issue 2, Pages 148-155
• Classification of Chemical Compounds to Support Complex Queries in a Pathway Database, Ulrike Wittig, Andreas Weidemann, Renate Kania, Christian Peiss, and Isabel Rojas
  Volume 5 (2004), Issue 2, Pages 156-162
• TRANSPATH ®—A High Quality Database Focused on Signal Transduction, Claudia Choi, Mathias Krull, Alexander Kel, Olga Kel-Margoulis, Susanne Pistor, Anatolij Potapov, Nico Voss, and Edgar Wingender
  Volume 5 (2004), Issue 2, Pages 163-168
• Interoperability of CABRI Services and Biochemical Pathways Databases, Paolo Romano, Ottavia Aresu, Maria Assunta Manniello, and Barbara Parodi
  Volume 5 (2004), Issue 2, Pages 169-172
• Interactome Data and Databases: Different Types of Protein Interaction, Javier De Las Rivas and Alberto de Luis
  Volume 5 (2004), Issue 2, Pages 173-178
• From Databases to Modelling of Functional Pathways, Sergio Nasi
  Volume 5 (2004), Issue 2, Pages 179-183
• The PlaNet Consortium: A Network of European Plant Databases Connecting Plant Genome Data in an Integrated Biological Knowledge Resource, H. Schoof, R. Ernst, and K. F. X. Mayer
  Volume 5 (2004), Issue 2, Pages 184-189
• Shaping Biological Knowledge: Applications in Proteomics, F. Lisacek, C. Chichester, P. Gonnet, O. Jaillet, S. Kappus, F. Nikitin, P. Roland, G. Rossier, L. Truong, and R. Appel
  Volume 5 (2004), Issue 2, Pages 190-195
• Looking for Cancer Clues in Publicly Accessible Databases, Djamel Medjahed, Peter F. Lemkin, Gary W. Smythers, and David J. Munroe
  Volume 5 (2004), Issue 2, Pages 196-200
• Data Integration and Analysis for Medical Systems Biology, Johannes H. G. M. van Beek
  Volume 5 (2004), Issue 2, Pages 201-204
• Erratum
  Volume 5 (2004), Issue 2, Pages 205-205
• Conference Calendar
  Volume 5 (2004), Issue 2, Pages 206-208
• Current Awareness on Comparative and Functional Genomics
  Volume 5 (2004), Issue 2, Pages 209-214
• In This Issue
  Volume 5 (2004), Issue 3, Pages 215-215
• Quantitative Genome-Wide Analysis of Yeast Deletion Strain Sensitivities to Oxidative and Chemical Stress, Chandra L. Tucker and Stanley Fields
  Volume 5 (2004), Issue 3, Pages 216-224
• Shotgun Cloning of Transposon Insertions in the Genome of Caenorhabditis elegans, Alexander M. van der Linden and Ronald H. A. Plasterk
  Volume 5 (2004), Issue 3, Pages 225-229
• Antarctic Genomics, Melody S. Clark, Andrew Clarke, Charles S. Cockell, Peter Convey, H. William Detrich III, Keiron P. P. Fraser, Ian A. Johnston, Barbara A. Methe, Alison E. Murray, Lloyd S. Peck, Karin Römisch, and Alex D. Rogers
  Volume 5 (2004), Issue 3, Pages 230-238
• A Special Section of Selected Reviews From the Plant & Animal Genome XII Conference
  Volume 5 (2004), Issue 3, Pages 239-239
• RNAi for Plant Functional Genomics, Louisa Matthew
  Volume 5 (2004), Issue 3, Pages 240-244
• A Comparison of Global Gene Expression Measurement Technologies in Arabidopsis thaliana, Sean J. Coughlan, Vikas Agrawal, and Blake Meyers
  Volume 5 (2004), Issue 3, Pages 245-252
• Functional Genomics in Chickens: Development of Integrated-Systems Microarrays for Transcriptional Profiling and Discovery of Regulatory Pathways, L. A. Cogburn, X. Wang, W. Carre, L. Rejto, S. E. Aggrey, M. J. Duclos, J. Simon, and T. E. Porter
  Volume 5 (2004), Issue 3, Pages 253-261
• Creating Porcine Biomedical Models Through Recombineering, Margarita M. Rogatcheva, Laurie A. Rund, Kelly S. Swanson, Brandy M. Marron, Jonathan E. Beever, Christopher M. Counter, and Lawrence B. Schook
  Volume 5 (2004), Issue 3, Pages 262-267
• MAGIC Database and Interfaces: An Integrated Package for Gene Discovery and Expression, Marie-Michèle Cordonnier-Pratt, Chun Liang, Haiming Wang, Dmitri S. Kolychev, Feng Sun, Robert Freeman, Robert Sullivan, and Lee H. Pratt
  Volume 5 (2004), Issue 3, Pages 268-275
• New Computational Tools for Brassica Genome Research, Christopher G. Love, Jacqueline Batley, Geraldine Lim, Andrew J. Robinson, David Savage, Daniel Singh, German C. Spangenberg, and David Edwards
  Volume 5 (2004), Issue 3, Pages 276-280
• On the Tetraploid Origin of the Maize Genome, Zuzana Swigonova, Jinsheng Lai, Jianxin Ma, Wusirika Ramakrishna, Victor Llaca, Jeffrey L. Bennetzen, and Joachim Messing
  Volume 5 (2004), Issue 3, Pages 281-284
• Solanaceae—A Model for Linking Genomics With Biodiversity, Sandra Knapp, Lynn Bohs, Michael Nee, and David M. Spooner
  Volume 5 (2004), Issue 3, Pages 285-291
• Conference Calendar
  Volume 5 (2004), Issue 3, Pages 292-294
• Current Awareness on Comparative and Functional Genomics
  Volume 5 (2004), Issue 3, Pages 295-302
• In This Issue
  Volume 5 (2004), Issue 4, Pages 303-303
• Comparative Genomic Assessment of Novel Broad-Spectrum Targets for Antibacterial Drugs, Thomas A. White and Douglas B. Kell
  Volume 5 (2004), Issue 4, Pages 304-327
• Evolution and Cellular Function of Monothiol Glutaredoxins: Involvement in Iron-Sulphur Cluster Assembly, Felipe Vilella, Rui Alves, María Teresa Rodríguez-Manzaneque, Gemma Bellí, Swarna Swaminathan, Per Sunnerhagen, and Enrique Herrero
  Volume 5 (2004), Issue 4, Pages 328-341
• Investigation Into the use of C- and N-terminal GFP Fusion Proteins for Subcellular Localization Studies Using Reverse Transfection Microarrays, Ella Palmer and Tom Freeman
  Volume 5 (2004), Issue 4, Pages 342-353
• Mapping the Gene Ontology Into the Unified Medical Language System, Jane Lomax and Alexa T. McCray
  Volume 5 (2004), Issue 4, Pages 354-361
• Design, Implementation and Maintenance of a Model Organism Database for Arabidopsis thaliana, Danforth Weems, Neil Miller, Margarita Garcia-Hernandez, Eva Huala, and Seung Y. Rhee
  Volume 5 (2004), Issue 4, Pages 362-369
• Conference Calendar
  Volume 5 (2004), Issue 4, Pages 370-372
• Current Awareness on Comparative and Functional Genomics
  Volume 5 (2004), Issue 4, Pages 373-380
• In This Issue
  Volume 5 (2004), Issue 5, Pages 381-381
• A critical and Integrated View of the Yeast Interactome, Michael Cornell, Norman W. Paton, and Stephen G. Oliver
  Volume 5 (2004), Issue 5, Pages 382-402
• Comparative Analysis of the Testis and Ovary Transcriptomes in Zebrafish by Combining Experimental and Computational Tools, Yang Li, Jer Ming Chia, Richard Bartfai, Alan Christoffels, Gen Hua Yue, Ke Ding, Mei Yin Ho, James A. Hill, Elia Stupka, and Laszlo Orban
  Volume 5 (2004), Issue 5, Pages 403-418
• Genome-Wide Analysis of the Effects of Heat Shock on a Saccharomyces cerevisiae Mutant With a Constitutively Activated cAMP-Dependent Pathway, Dawn L. Jones, June Petty, David C. Hoyle, Andrew Hayes, Stephen G. Oliver, Isabel Riba-Garcia, Simon J. Gaskell, and Lubomira Stateva
  Volume 5 (2004), Issue 5, Pages 419-431
• A Case Study on Choosing Normalization Methods and Test Statistics for Two-Channel Microarray Data, Yang Xie, Kyeong S. Jeong, Wei Pan, Arkady Khodursky, and Bradley P. Carlin
  Volume 5 (2004), Issue 5, Pages 432-444
• Conference Calendar
  Volume 5 (2004), Issue 5, Pages 445-447
• Current Awareness on Comparative and Functional Genomics
  Volume 5 (2004), Issue 5, Pages 448-455
• In This Issue
  Volume 5 (2004), Issue 6-7, Pages 457-458
• Identification of a Core Set of Genes That Signifies Pathways Underlying Cardiac Hypertrophy, Claes C. Strøm, Mogens Kruhøffer, Steen Knudsen, Frank Stensgaard-Hansen, Thomas E. N. Jonassen, Torben F. Ørntoft, Stig Haunsø, and Søren P. Sheikh
  Volume 5 (2004), Issue 6-7, Pages 459-470
• Navigating Public Microarray Databases, Christopher J. Penkett and Jürg Bähler
  Volume 5 (2004), Issue 6-7, Pages 471-479
• Workshop—Predicting the Structure of Biological Molecules, Damian Counsell
  Volume 5 (2004), Issue 6-7, Pages 480-490
• Meeting Report: The Institute for Genomic Research/Wellcome Trust Conference: Genomes 2004 14–17 April 2004, the Wellcome Trust Conference Centre, The Wellcome Trust Genome Campus, Hinxton, Cambridge, Uk, Jo Wixon
  Volume 5 (2004), Issue 6-7, Pages 491-496
• A Special Section of Articles From the 7thAnnual Bio-Ontologies Meeting “Ontologies and Bio-Images”
  Volume 5 (2004), Issue 6-7, Pages 497-497
• The Seventh Annual Bio-Ontologies Meeting Moat House Hotel, Glasgow, 30 July 2004, Phillip Lord and Robert Stevens
  Volume 5 (2004), Issue 6-7, Pages 498-500
• Biomedical Informatics and Granularity, Anand Kumar, Barry Smith, and Daniel D. Novotny
  Volume 5 (2004), Issue 6-7, Pages 501-508
• Obol: Integrating Language and Meaning in Bio-Ontologies, Christopher J. Mungall
  Volume 5 (2004), Issue 6-7, Pages 509-520
• The SOFG Anatomy Entry List (SAEL): An Annotation Tool for Functional Genomics Data, Helen Parkinson, Stuart Aitken, Richard A. Baldock, Jonathan B. L. Bard, Albert Burger, Terry F. Hayamizu, Alan Rector, Martin Ringwald, Jeremy Rogers, Cornelius Rosse, Christian J. Stoeckert Jr., and Duncan Davidson
  Volume 5 (2004), Issue 6-7, Pages 521-527
• The Molecule Role Ontology: An Ontology for Annotation of Signal Transduction Pathway Molecules in the Scientific Literature, Satoko Yamamoto, Takao Asanuma, Toshihisa Takagi, and Ken Ichiro Fukuda
  Volume 5 (2004), Issue 6-7, Pages 528-536
• Ontology for Genome Comparison and Genomic Rearrangements, Keith Flanagan, Robert Stevens, Matthew Pocock, Pete Lee, and Anil Wipat
  Volume 5 (2004), Issue 6-7, Pages 537-544
• Ontologies for the Description of Mouse Phenotypes, G. V. Gkoutos, E. C. J. Green, A.-M. Mallon, A. Blake, S. Greenaway, J. M. Hancock, and D. Davidson
  Volume 5 (2004), Issue 6-7, Pages 545-551
• Conference Calendar
  Volume 5 (2004), Issue 6-7, Pages 552-554
• Current Awareness on Comparative and Functional Genomics
  Volume 5 (2004), Issue 6-7, Pages 555-562
• Current Awareness on Comparative and Functional Genomics
  Volume 5 (2004), Issue 6-7, Pages 563-570
• In This Issue
  Volume 5 (2004), Issue 8, Pages 571-571
• Maternally and Paternally Silenced Imprinted Genes Differ in Their Intron Content, Marie E. Fahey, Walter Mills, Desmond G. Higgins, and Tom Moore
  Volume 5 (2004), Issue 8, Pages 572-583
• Exploring the Foundation of Genomics: A Northern Blot Reference set for the Comparative Analysis of Transcript Profiling Technologies, Danielle Kemmer, Margareta Faxén, Emily Hodges, Jonathan Lim, Elena Herzog, Elsebrit Ljungström, Anders Lundmark, Mary K. Olsen, Raf Podowski, Erik L. L. Sonnhammer, Peter Nilsson, Mark Reimers, Boris Lenhard, Steven L. Roberds, Claes Wahlestedt, Christer Höög, Pankaj Agarwal, and Wyeth W. Wasserman
  Volume 5 (2004), Issue 8, Pages 584-595
• Som-Based Class Discovery Exploring the ICA-Reduced Features of Microarray Expression Profiles, Andrei Dragomir, Seferina Mavroudi, and Anastasios Bezerianos
  Volume 5 (2004), Issue 8, Pages 596-616
• A Special Section of Reviews From the 2nd Conference on Standards and Ontologies for Functional Genomics (SOFG)
  Volume 5 (2004), Issue 8, Pages 617-617
• Standards and Ontologies for Functional Genomics 2, Midori A. Harris and Helen Parkinson
  Volume 5 (2004), Issue 8, Pages 618-622
• The Montagues and the Capulets, Carole Goble and Chris Wroe
  Volume 5 (2004), Issue 8, Pages 623-632
• Standardization Initiatives in the (eco)toxicogenomics Domain: A Review, Susanna Assunta Sansone, Norman Morrison, Philippe Rocca-Serra, and Jennifer Fostel
  Volume 5 (2004), Issue 8, Pages 633-641
• Sequence Ontology Annotation Guide, Karen Eilbeck and Suzanna E. Lewis
  Volume 5 (2004), Issue 8, Pages 642-647
• Overview and Utilization of the NCI Thesaurus, Gilberto Fragoso, Sherri de Coronado, Margaret Haber, Frank Hartel, and Larry Wright
  Volume 5 (2004), Issue 8, Pages 648-654
• Conference Calendar
  Volume 5 (2004), Issue 8, Pages 655-657
• Current Awareness on Comparative and Functional Genomics
  Volume 5 (2004), Issue 8, Pages 658-669