Transcriptome Analysis of Porcine PBMCs Reveals the Immune Cascade Response and Gene Ontology Terms Related to Cell Death and Fibrosis in the Progression of Liver Failure

Table 2

Qualitative analysis of PBMC RNA-Seq data in a porcine model of ALF.

Sample name	Raw reads	20 value	Clean reads	Mapped reads	Genic reads	Percentage of genic reads	Expressed gene number
Baseline-1	80,876,352	94.80%	77,508,054	63,736,589	51,530,237	80.80%	15,249
Baseline-2	122,478,648	95.40%	117,994,584	64,288,782	47,627,719	74.10%	14,990
Baseline-3	97,633,918	95.10%	93,252,338	76,290,007	48,400,655	63.40%	15,470
Baseline-4	91,203,498	95.30%	87,519,976	70,759,871	54,612,207	77.20%	15,642
Dying-1	106,182,528	95.20%	101,728,266	83,553,821	57,816,273	69.20%	15,563
Dying-2	93,997,436	95.20%	90,503,598	74,471,193	60,365,900	81.10%	15,101
Dying-3	118,901,914	94.90%	91,408,790	73,952,809	57,686,330	78.00%	15,712
Dying-4	84,848,674	95.30%	81,623,206	67,004,468	55,869,637	83.40%	15,343
Failure-1	80,262,120	95.20%	76,885,638	63,014,127	49,808,658	79.00%	15,297
Failure-2	100,438,952	95.30%	100,291,397	82,963,827	68,021,072	82.00%	15,812
Failure-3	86,394,661	94.90%	66,295,638	54,080,154	38,129,055	70.50%	15,228
Failure-4	99,697,480	94.80%	95,927,678	79,312,204	60,637,999	76.50%	15,404