Relaxation Estimation of RMSD in Molecular Dynamics Immunosimulations
Figure 6
Fit and extrapolation of plateau values for increasing . (a) 10 ns trajectory1, (b) 50 ns trajectory2, (c) 200 ns trajectory3; see Table 1. Red circles represent plateau values the error bars denote their asymptotic standard errors. The solid blue curve shows a nonlinear least-squares fit of (3) to the plateau values . From the latter fit the limiting plateau value was extracted and is shown as a solid horizontal line together with its asymptotic standard error as obtained from the fit of (3).
