Fast and Accurate Genome-Wide Association Test of Multiple Quantitative Traits

Table 5

Six novel SNPs identified in the ARIC joint association test, which were not significant in the corresponding MAGIC consortium meta-analyses of fasting glucose (FG), fasting insulin (FI), and 2-hour fasting glucose (2hFG) but were significant in the MAGIC meta-analysis of fasting proinsulin (FP). We listed the ARIC joint test’s values (the proposed MLM Wald test and the GEE chi-square test) and the corresponding MAGIC consortium meta-analyses’ values for FG, FI, 2hFG, and FP.

SNP	Chr	bp	ARIC joint test’s value		MAGIC meta-analysis’ value
			Wald	GEE	FG	FI	2hFG	FP
rs4502156	15	62383155
rs7163757	15	62391608
rs8037894	15	62394264
rs6494307	15	62394690
rs7167878	15	62396189
rs7172432	15	62396389