Whole-Genome Sequencing Identifies the Egl Nine Homologue 3 (egln3/phd3) and Protein Phosphatase 1 Regulatory Inhibitor Subunit 2 (PPP1R2P1) Associated with High-Altitude Polycythemia in Tibetans at High Altitude

Table 2

Summary of whole-genome sequencing and variant call statistics per individual.

Category	Sample	Paired-end reads (million)	Mapped rate	Mean depth	Coverage of genome	Final SNVs	SNVs (%)	Nonsilent SNVs
HAPC	D1WGC025333	421.0	99.6%	42.5	99.7%	2,672,708	94.2	6,600
	D2WGC025334	417.6	99.5%	41.8	99.8%	3,506,627	94.1	9,610
	D3WGC025335	404.4	99.7%	41.1	99.8%	3,536,613	93.5	9,926
	D4WGC025336	408.8	99.5%	41.3	99.7%	3,532,401	93.7	9,918
	D5WGC025337	410.3	99.6%	41.6	99.8%	3,511,589	94.2	9,605
	D6WGC025338	402.3	99.5%	40.7	99.7%	3,507,517	94.1	9,595
	D8WGC025340	366.2	40.7%	14.4	99.5%	3,362,350	93.2	9,593
	D10WGC025341	412.0	97.4%	40.7	99.8%	3,529,927	93.6	9,760
	D13WGC025344	392.8	99.5%	39.3	99.8%	3,538,731	93.5	9,860
	D15WGC025346	401.3	99.4%	40.3	99.7%	3,510,739	93.8	9,687
Control	Z1WGC025347	429.5	99.5%	43.5	99.1%	3,546,349	93.5	9,750
	Z2WGC025348	365.3	99.8%	37	99.7%	3,529,029	93.4	9,835
	Z3WGC025349	305.2	99.6%	30.9	99.0%	3,561,607	93.3	9,940
	Z4WGC025350	429.0	99.6%	43.4	99.7%	3,511,388	93.7	9,629
	Z5WGC025351	422.8	99.6%	42.6	99.7%	3,513,151	93.8	9,467
	Z6WGC025352	363.9	99.8%	37	99.1%	3,544,574	93.6	9,735
	Z7WGC025353	412.8	99.5%	41.8	99.8%	3,535,839	93.6	9,857
	Z8WGC025354	420.8	99.4%	42.7	99.7%	3,544,492	93.6	9,705
	Z13WGC025359	413.5	99.5%	41.9	99.8%	3,534,525	93.5	9,841
	Z14WGC025360	412.1	99.5%	41.9	99.1%	3,561,399	93.4	9,821