Probiotics and the Microbiome in Celiac Disease: A Randomised Controlled Trial

Table 1

Targeted microbiota.

Predominant bacteria	Opportunistic bacteria and fungi	Pathogenic bacteria	Parasites
Bacteroides sp.	Achromobacter	Helicobacter sp.	Blastocystis hominis
Clostridia sp.	Alcaligenes sp.	Campylobacter sp.	Cryptosporidium sp.
Prevotella sp.	Aeromonas sp.	Clostridium difficile	Entamoeba sp.
Fusobacteria sp.	Bacillus sp.	E. coli H1:O157	Entamoeba histolytica
Streptomyces sp.	Citrobacter sp.		Entamoeba coli
Mycoplasma sp.	Enterobacter sp.		Dientamoeba fragilis
Lactobacillus sp.	Klebsiella oxytoca		Endolimax nana
Bifidobacterium sp.	Klebsiella pneumoniae		Trichomonas sp.
Escherichia coli	Morganella morganii		Giardia intestinalis
	Pseudomonas sp.		Ascaris lumbricoides
	Salmonella sp.		Enterobius vermicularis
	Staphylococcus aureus		Necator americanus
	Saccharomyces sp.		Strongyloides sp.
	Candida albicans		Taenia solium
	Geotrichum sp.		Trichuris trichiura
	Rhodotorula sp.		Schistosoma mansoni
			Clonorchis sinensis