Feasibility of Whole RNA Sequencing from Single-Cell mRNA Amplification

Table 3

Relationship between NGS-RPKM and quantitative rtPCR.

Group	Tracking_id	Gene_short_name	NGS-RPKM (fold)	Q-rtPCR (fold)
1	XLOC_000003	OR4G11P	2.082524442	4.12
1	XLOC_000004	OR4F5	1.912537997	2.54
1	XLOC_000018	WBP1LP6	2.098156562	0.62
1	XLOC_000019	CICP3	1.813002417	0.91
1	XLOC_000022	FAM87B	6.636153863	11.21
1	XLOC_000026	SAMD11	2.552233617	0.99
1	XLOC_000027	KLHL17	2.204370704	0.98
1	XLOC_000039	PUSL1	4.947080901	8.23
1	XLOC_000040	GLTPD1	2.846803765	3.32
1	XLOC_000041	TAS1R3	7.504951705	6.87
1	XLOC_000042	RP5-890O3.3	2.188584961	2.65
1	XLOC_001676	NDUFS2	10.64542674	15.21
1	XLOC_005590	RP11-57C13.5	3.13139258	2.12
1	XLOC_005591	PAPSS2	2.899004155	0.97
1	XLOC_005592	CFL1P1	2.49551064	0.87
1	XLOC_005593	PTEN	3.377478904	4.86
1	XLOC_014938	hsa-mir-3171	16.57512918	4.92
1	XLOC_014939	RP11-412H8.2	11.68354982	12.32
1	XLOC_014940	BTF3P2	8.902118851	7.23
1	XLOC_005113	APBB1IP	6.081246865	6.89
1	XLOC_005114	RNA5SP307	5.098972331	7.21
1	XLOC_022012	TOB1	1.870483205	2.12
1	XLOC_000060	SKI	1.209748635	2.43
1	XLOC_025300	ERF	1.743180444	3.12
1	XLOC_025768	MYC	1.193416773	2.17
2	XLOC_000028	PLEKHN1	0.316434457	1.12
2	XLOC_000029	ISG15	0.812291089	0.78
2	XLOC_000030	AGRN,RP11-54O7.14	0.020428549	0.45
2	XLOC_000031	RP11-465B22.3	0.031559673	0.86
2	XLOC_000654	MIR5584	0.120544436	0.92
2	XLOC_000655	C1orf228	0.284243365	1.13
2	XLOC_000656	KIF2C	0.387780493	1.23
2	XLOC_000657	RPS8,SNORD38A	0.3321431	0.89
2	XLOC_000658	SNORD46	0.293275977	2.21
2	XLOC_000028	PLEKHN1	0.316434457	0.92
2	XLOC_000029	ISG15	0.812291089	1.78