Table 1: MLPA probes and results.

Probe namea Size (bp) Resultsb Sequencec This study [9] [10] 5′ half probe 3′ half probe IRLAPL1 126 − − − CAGCTCTAGCCACTGCCCATCCAGATCTCCGTTCTACCTTTCACA ACACGTACCATTCACAAATGCGTCAGAAACACTACTACG IGS10 93 − − − CTATGCTGCCAGAAGTCTTAGCAA AATGCCACATGTGCCCAAGAGAGATTC IGS11 90 − − − GGAAAATCTCTCTGGGCAGCTGCA GCCACAGTGCAGGTTGCTGACTTC IGS15 117 − − − CACAATTTGGAGCAACTTAAAGAAGATATCAGAAATT TTCTCCAAATTCTGTAGAAAGCACAAATTAAAACAGAG IGS16 102 − − − GTTTTCTAGAGCCATGTATGAGATTGCAGA TGTGAATATTGTTCCAGTGAGAGGATACTG IGS28 99 − − − CTAAATGCTAAAGTAATGGTGCCAGTAA AAGTGACATTGGTAACTTTGGAAACTCTG IGS29 93 − − − GCACTGCGGCCTTCTGACATCAGGTATG ACTCCCTGCCCTGATCTTTCTAC IGS17 114 − − + GAGTAGATCTCCTTACAGAGAAGCTAGTTGTGGATG TTGTCCCCTTCTTCTTCCTGAATGCATTCCTTCAGG IGS12 111 − − + GAAGGAATTCTAATATCAGCAGTCTGTGAACA ATGTGAAAATCACTGCCTAAGTCTATTGCAGGCACAG IGS13 117 − − + GCTTCCCCCTTGGATTCTTTATAGCCAATGCACTTA AAATAGGTTGTTTTGGCACAGCCTGCACAGTTTGATACC IGS1 99 − − + GGAGGAAAGTAGGACAATTTGGAGGA ATTTGGGTTCTCAGTGGGGTGGCATTGTAGG IGS2 117 − − + GTGTATGATAACTGCGTGTCCTCACTGTGAATAATAGCTTG TGGAACACAAACTGATAGAAATAGACGCATATTG IGS3 111 − − + CAGCAGCTGGTGAGTGTTCAGCATTAGATATGAGAAGTTA AGCTGAATAAACTGGAGGAAAACCTTCTG IGS21 108 + − + GTATCAATGATTTGGGGTTCTGTGTTC TATAAGCTACAAGACCTGCCCACCACATATTTACACTTC IGS22 90 + − + CCCAATTCCTCAGTTACTCACTGG TAGTAAGCTGGACCCTTAGGGAGG IGS23 126 + − + GAGCATATTTACATGCACCTGGAGGAAGTATCTGATACTATTT CTAAAGATTAAGTAACAGTGCCTCTTCACTCTTGAATCTAG IGS24 120 + − + CTTATCCAACTAGGCCTTACATAACAAGTAATAGTCTCCAG ATGGAATGGCAAAACAACTCTACCAGTGCACTACATC IGS26 93 + − + GATTAGACAATGTGGGCAGCTATCT TGGCAACATGACATAATTGGAGCTGC IGS6 117 + − + GTGGCATAAGGAGCTCACAGCTAGAGTTACT ATCAAAAGCTAGGCAAGCAGAGAAATATTTATGCCACTATAGCC IGS7 90 + − + CTGCTAGATGAGCGCACCTCA ACAGCAAGAGGCTATAGGATGTTCTGC IGS8 102 + − + CATCCTACATTAGATGATCTCAGTCAACCA CTGACAAAGACTGAAGTTCAAATTCTGATG IGS9 108 + − + CCCTCAGATGGTAAGCTTCAGAGTTGAGAGACT AAGCCTATAATGGAAAAGTGCTCTTAACTTTGG MAGEB2-5′ 96 + − + GGACTGGCGGATTTGGGTCAGCACGCAT ATTCGTCCCAGGCTGCTAGATACTGC MAGEB2ex2 93 + + + GGCCACACTTACACCTTCATCGACA AGGTAGACCTCACTGATGAGGAATCC MAGEB1 120 + + + GAAGGAAGACAACCCTAGTGGCCACACCTAC ACCCTCGTCAGTAAGCTAAACCTCACCAATGATGGAAACCTGAGCAG MAGEB1last 113 + + + GCTAAACCTCACCAATGATGGAAACCTGAGCAATGA TTGGGACTTTCCCAGGAATGGGCTTCTGATGCCTCTCCTGG DAX1 102 + + + GCAGCCTCAGCGGGCCTGTTGAAGACGCTG CGCTTCGTCAAGTACTTGCCCTGCTTCCAG IGS4 132 + + + CCAAGGAAGTCATAACAGCACAATAGCTATAC AATCTGATAACCTTGTTAGCTCAAATCAAAGCTCCTAACAAGTAGGAGAGGTTAGTGC CXorf21 90 + + + CCAGCCACCTGCTCATTATAAGAG GCACAACTCCAGTGGATGTCATTC GK 96 + + + CACTATATGTAGGTTATCTCTTCGGTGACA TACACTGCAATTTGAGAGGGCTGG IGS5 114 + + + GCAAGCAAGTAAGTGCTGTATCTCCTAGCGAC TCCCTCCATCACCATTCCTGGTACTCTGTTGTCAAATGGC IGS14 96 + + + GGCAGAGTCCAATCTATAGCAGAGGAA t CAGCAGCAGTAGAGAGAGTATAAAGC IGS18 99 + + + GAGCTGGTGGAGAAACAGTTACAGAAGAT AATGGAAAGCATGGGATCCTGGGAGTGc IGS19 135 + + + CCGATACTTGCATGTTGAGATGCCATCCACATTTAGCCATTTAATAC ATAATATTGGTTTAACATTTTATCGAGGAAAGCCTGCCCTAGCACC IGS33 96 + + + GGTACTTGGGCCTGGGAAGACTGCAG AATGGGGTTCCTGCATGCAGGCTTCGCC IGS32 120 + + + GTTTCTGTGGCAGAGATAGGCATCTTCCATTCCATTGCTGG AGATATGTGGGGCTCCCTCAGAGAAGACTTAGAGACC IGS31 117 + + + CATCTGCCTGACATTTAACAAAGCGCATAATGGTTAGC TGATCAATCTGGAGTCCCCACAACTTCATATATCCTC IGS30 111 + + + CAGATGTGGATATGCTGGTTTCCAATAGTAAA CATGAATTGCTTTCAGGATTCACATTTAGGTACAAAG IGS20 123 + + − GATACATGTGACTATGGGTGATTACCTGGCATGTTTG AGCTAAGCCTTTATCACATAATTCACATTTGTAAGGCTCCTCAC MAP3K7IP3ex12 108 + + − GCTTCTGGTAGTGCTCAAAGTTTCACTTTCAA CCTGGCGCAGACTTTTCTGAATTCAGGTGTACCG MAP3K7IP3ex11 123 − + − GTGTCATGGATGTCTGCCTGTACTTTGGAGGTCACGCTA ATTCTTCGGGCTTTTCTCTCAATTGTGCAGGGGTCTGAGGAG TAB3ex10 102 − + − ATGGCTTTTGGATCAAAGTTTCCTATAAA GAAAGTAAATTCATCAGGCATTTAAGAACTC IGS27 99 − + − GTAATTAGAACAGGAAGAATGGGGGGGAAT AACTTGAGGGAGGGGGTAATTGGCAGC MAP3K7IP3ex8 99 − + − GGGATCGCAGTGGTGCAGCTGACTCTTC TGAGCCGTCTCTGCATCAGGTCATGCTCC MAP3K7IP3ex7 111 − − − CGGCAACAGGCTTCAAGATTGTTGTTATTC TAGGGGAGAAAAATGGTAAAAGTAACATTGGCAACATTC MAP3K7IP3ex6 114 − − − GTGGCCAAGTTTCTCTTAGGAAATGGATGTT AACCGGCTTTCCAAAAGTAATGATCTTCTAGCACCACAGTC MAP3K7IP3ex1 123 − − − GCTTGGACTCTGAGGTTCTGACCGTAGCATCAGATCACACAGAGAAC TACCTTGCTCGCCCGAATGTGTGGCTTTCTCTGC DMD 135 − − − CATCGCTCTGCCCAAATCATCTGCCATGT GGAAAAGACTTCCTACATTGTGTCCTGGAAAACAAAGAGAAAGAAAGACAGACTTTACAAAAGG

aThe probes are listed according to their genetic location from the most telomeric to the most centromeric. bPlus and minus signs indicate duplicated and nonduplicated regions, respectively. cThe 5′ half probes are preceded by the universal tag sequence GGGTTCCCTAAGGGTTGGA; the 3′ half-probes are followed by the universal tag sequence TCTAGATTGGATCTTGCTGGCAC and are phosphorylated at the 5′ end.